Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1801
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    32   0.083
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   1.3  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   2.3  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   2.3  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    27   3.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.1  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    25   9.5  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -2

Query: 445 RLTCSRF*LRMAAEDFGVEVLVQPKAGPVLDGW 347
           +L  SRF L   AEDFGV++   PK  P+L  W
Sbjct: 218 QLWMSRFLLHRIAEDFGVKISFHPK--PILGDW 248


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 114 KTWSQ-TYN*RVVEPSYNQETRTXNTSPQTRILRAVITTK-RHRPI 245
           + WS+ T     VEPS  +  RT   SPQ R+L +++  +  H PI
Sbjct: 211 EVWSKFTRFSSTVEPSRAETKRTVQFSPQYRVLLSLLVGEGNHEPI 256


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 551 PPYHHPGLRAILISSFTSSVKYCXLSSVRCSSITKPSDLLEILTSY 414
           P YH P  +++   ++T  V Y  L S   +++    D L++++ Y
Sbjct: 145 PAYHIPARKSVPTDAYTPMVSYRKLKSKLKTTLLDFYDYLKLVSQY 190


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 TEASLLSIHQEQVQPLVEPRPQH 396
           TE  +L  HQE  QPL++   QH
Sbjct: 530 TEPQILEYHQEWPQPLIQSIQQH 552


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 120 RFXSRHIRLCGCRCGYG*WSYIVHFE 43
           RF  RHI  C C    G W Y+  +E
Sbjct: 64  RFIVRHIHCCRCHTYIG-WKYVSSYE 88


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
 Frame = +1

Query: 244  FNHYWQRFILLPLEQATQYTVIXPXEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPPYEV 423
            F HYW R    P+E+   Y +I P   K   ++      ++ P++   P         E 
Sbjct: 855  FCHYWLRRGSFPVEEQEHY-IITPFVQKNLLNIARACSTRMFPILIQGPTSSGKTSMIEY 913

Query: 424  KISSRSDGFV-IDEHLTDDSXQYL 492
                    FV I+ H   D  +Y+
Sbjct: 914  VAKKTGHKFVRINNHEHTDLQEYI 937


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 542 HHPGLRAILISSFTSSVKYCXLSSVRCSSITKPSDLLEILTS 417
           HHP  R +L  S   S   C LS    +S+     LL+I  S
Sbjct: 174 HHPNSRLLLRISTDDSNSLCRLSLKFGASLDDTGKLLDIAKS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,481
Number of Sequences: 5004
Number of extensions: 49871
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)