Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1801
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944...    31   0.80 
09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546...    31   1.1  
04_04_1388 - 33179270-33180679                                         29   3.2  
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294...    28   7.4  
08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464...    28   7.4  
05_07_0242 + 28615573-28616304                                         28   7.4  
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524...    27   9.8  

>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
            24295208-24295282
          Length = 1463

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 22/79 (27%), Positives = 30/79 (37%)
 Frame = +1

Query: 211  APSSPPSVTDRFNHYWQRFILLPLEQATQYTVIXPXEPKTEASLLSIHQEQVQPLVEPRP 390
            AP SP      F  Y    +LLP     Q T +   +  TE   +     Q+   VE   
Sbjct: 1091 APCSPDRAPPGFETYKSSQLLLPSPSLAQTTNVRQDQSVTEPVSVIEEAPQLLHSVEVMG 1150

Query: 391  QHQNLLPPYEVKISSRSDG 447
             H + +PP      S +DG
Sbjct: 1151 VHMDAVPPLLPSSESGADG 1169


>09_04_0637 -
           19153136-19153513,19153607-19153759,19153857-19154675,
           19155068-19155174,19155434-19155548
          Length = 523

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 575 SESIXKHPPPYHHPGLRAILISSFTSSVKYCXLSSVRCSSITKPSDLLEILTSYGGRR 402
           S S  +  P YHH  L+++ IS F S+     L+     + T   + LE+ T++G  R
Sbjct: 412 SSSHLRQMPEYHHEHLKSVTISGFCSAKSLVELTCHIVENTTS-LERLELDTTHGNAR 468


>04_04_1388 - 33179270-33180679
          Length = 469

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 304 VIXPXEPKTEASLLSIHQEQVQPLVEPRPQHQNL 405
           V  P      A LL+ H + V+PLV P P H +L
Sbjct: 41  VTTPGNAAQLAPLLAAHPDSVRPLVLPFPSHPSL 74


>11_01_0389 -
           2937242-2939476,2939556-2939666,2941254-2941450,
           2941543-2941633
          Length = 877

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 259 QRFILLPLEQATQYTVIX--PXEPKTEASLLSIHQEQVQPLVEPRPQHQN 402
           ++ +LLP  Q  Q  +    P  P+T   LL     ++ P+V P P  QN
Sbjct: 104 EKVMLLPFSQDVQKFICIKRPTLPETSFELLREVYPEITPVVLPSPVEQN 153


>08_01_0535 -
           4638954-4639127,4639894-4639944,4640287-4640352,
           4640492-4640557,4640701-4640892,4641282-4641780,
           4642009-4642364
          Length = 467

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 394 HQNLLPPYEVKISSRSDGFVIDEHLTDDSXQYLTDDVKELIKIARNPG**XGGG 555
           H  +  P  +  SS ++G ++ EH  D + Q+L++   EL+    +P    GGG
Sbjct: 141 HHQINTPSLMSNSSSNNGVMLQEHQHDQNYQFLSNLGFELLSSPTSP---YGGG 191


>05_07_0242 + 28615573-28616304
          Length = 243

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +1

Query: 283 EQATQYTVIXPXEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPPYEVKISSRSDGFVIDE 462
           +Q  Q  ++ P  P     LL       QP   P PQH  L PP+    +    G    E
Sbjct: 84  QQQQQLRLLIPSPPTPRVPLL---MPPPQPQPHPHPQHPYLHPPFPYHHTPSGSGGTTTE 140

Query: 463 HLTDD 477
             +++
Sbjct: 141 SSSEE 145


>04_04_0254 -
           23951495-23951902,23952000-23952155,23952344-23952485,
           23952772-23953160,23953833-23953948,23954290-23954371
          Length = 430

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = -1

Query: 575 SESIXKHPPPYHHPGLRAILISSFTSSVKYCXLSSVRCSSITKPSDLLEILTSYGGR 405
           ++S  +H P +HH  L+++ I+ F+S+     L+    ++     + L + T YG R
Sbjct: 307 TDSQLRHIPEHHHGHLKSVKITGFSSAKSLVELTCYILNNAVS-LECLTLDTIYGPR 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,212,341
Number of Sequences: 37544
Number of extensions: 377764
Number of successful extensions: 1095
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)