Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1801
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC129991-1|AAI29992.1|  754|Homo sapiens PERQ1 protein protein.        32   1.5  
AY176044-1|AAO46888.1| 1035|Homo sapiens Grb10 interacting GYF p...    32   1.5  
AK027124-1|BAB15667.1|  704|Homo sapiens protein ( Homo sapiens ...    31   3.6  
BC037988-1|AAH37988.1|  904|Homo sapiens MICAL-like 2 protein.         30   8.2  
AK126808-1|BAC86702.1|  493|Homo sapiens protein ( Homo sapiens ...    30   8.2  

>BC129991-1|AAI29992.1|  754|Homo sapiens PERQ1 protein protein.
          Length = 754

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 313 PXEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPPYEVKISSRSDGFVIDEHLTDDS 480
           P  P+ +   L+   +Q+Q L  PR   QNLLP     +S    G + D H +  S
Sbjct: 318 PPPPQQQQQQLTAFLQQLQALKPPRGGDQNLLPTMSRSLSVPDSGRLWDVHTSASS 373


>AY176044-1|AAO46888.1| 1035|Homo sapiens Grb10 interacting GYF
           protein 1 protein.
          Length = 1035

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 313 PXEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPPYEVKISSRSDGFVIDEHLTDDS 480
           P  P+ +   L+   +Q+Q L  PR   QNLLP     +S    G + D H +  S
Sbjct: 599 PPPPQQQQQQLTAFLQQLQALKPPRGGDQNLLPTMSRSLSVPDSGRLWDVHTSASS 654


>AK027124-1|BAB15667.1|  704|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23471 fis, clone HSI11969. ).
          Length = 704

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +1

Query: 157 LTTKRPELRTRPHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIXPXEPKTEA 336
           LT  RP+   RP  PG   P+  PS   R      R + +P         + P  P  EA
Sbjct: 436 LTPVRPDRTPRPASPGPSLPARSPSPPRR------RRLAVPASLDVCDNWLRPEPPGQEA 489

Query: 337 SLLSIHQEQVQPLVEPRP 390
            + S  +E+ +P ++ RP
Sbjct: 490 RVQSWKEEEKKPHLQGRP 507


>BC037988-1|AAH37988.1|  904|Homo sapiens MICAL-like 2 protein.
          Length = 904

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +1

Query: 157 LTTKRPELRTRPHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIXPXEPKTEA 336
           LT  RP+   RP  PG   P+  PS   R      R + +P         + P  P  EA
Sbjct: 636 LTPVRPDRTPRPASPGPSLPARSPSPPRR------RRLAVPASLDVCDNWLRPEPPGQEA 689

Query: 337 SLLSIHQEQVQPLVEPRP 390
            + S  +E+ +P ++ +P
Sbjct: 690 RVQSWKEEEKKPHLQGKP 707


>AK126808-1|BAC86702.1|  493|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44858 fis, clone BRALZ2003119. ).
          Length = 493

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +1

Query: 157 LTTKRPELRTRPHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIXPXEPKTEA 336
           LT  RP+   RP  PG   P+  PS   R      R + +P         + P  P  EA
Sbjct: 225 LTPVRPDRTPRPASPGPSLPARSPSPPRR------RRLAVPASLDVCDNWLRPEPPGQEA 278

Query: 337 SLLSIHQEQVQPLVEPRP 390
            + S  +E+ +P ++ +P
Sbjct: 279 RVQSWKEEEKKPHLQGKP 296


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,333,905
Number of Sequences: 237096
Number of extensions: 2097925
Number of successful extensions: 8995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8990
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)