Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1801
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF125962-2|AAY86293.1|  232|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC024845-4|AAK84623.2|  214|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical
           protein Y39G8C.4 protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 166 KRPELRTRPHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIXP 315
           K PE R  P KP   AP+ PP   D +    + +   P E +T+Y    P
Sbjct: 281 KCPERRQPPKKPYPPAPTMPP---DAYQPTTEAYYYPPTETSTEYVTAEP 327


>AF125962-2|AAY86293.1|  232|Caenorhabditis elegans Hypothetical
           protein Y39H10B.2 protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
 Frame = +1

Query: 166 KRPELRTRPHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIXPXEPKTEA-SL 342
           ++P+  +    P  ++PSS  + + R +   ++ ILL +EQ+ Q +     + KT+    
Sbjct: 34  RKPQFSSGNMTPAEFSPSSSSNSSLRRDAETRKLILLTMEQSRQQSEAMISQMKTQTEEF 93

Query: 343 LSIHQEQVQPLVEPRPQHQNLLPPYEVKISSRSDGFVIDEHLTDDSXQYLTDDVKELIKI 522
             I QE      E R + Q  L   E +   +    +I+   ++ S Q   + +++++++
Sbjct: 94  QRIVQELKDDADERRNRAQTSLDNSEYETLVQQRQKLIEN--SEKSQQETKEQLEKIVEL 151

Query: 523 AR 528
            R
Sbjct: 152 QR 153


>AC024845-4|AAK84623.2|  214|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.7 protein.
          Length = 214

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 203 PGLWGRVLSSGLLVVRWLHHPLVVGL 126
           P  WG  L++GLL + W++  L +G+
Sbjct: 158 PSFWGEYLAAGLLGLFWMYSLLNMGV 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,961
Number of Sequences: 27780
Number of extensions: 292705
Number of successful extensions: 922
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)