Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1794
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...   119   4e-28
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    28   1.8  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   3.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   4.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   9.5  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score =  119 bits (287), Expect = 4e-28
 Identities = 55/136 (40%), Positives = 88/136 (64%), Gaps = 3/136 (2%)
 Frame = +2

Query: 170 LVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTT---KKVESIELDIKNYSALAQWC 340
           L+IG GGREH + WKL +SP + K+Y APG+ G ++     K+E++ + + ++  L ++ 
Sbjct: 7   LLIGNGGREHTIAWKLCESPLISKVYVAPGNGGTASNGAESKMENVNIGVCDFEQLVKFA 66

Query: 341 KDNIIDLVVIGPEDPLAHGIVDGLVSYGIPCFGPNKAGAQIEANKDWAKRFMNKYQIPTA 520
            D  ++LV+ GPE PL  GI       GIPCFGP+   A++E +K ++K FM++  IPTA
Sbjct: 67  LDKDVNLVIPGPELPLVEGIEGHFRRVGIPCFGPSALAARMEGSKVFSKDFMHRNNIPTA 126

Query: 521 RHKSFTDAAAAKEFIN 568
            +KSF++   AK F++
Sbjct: 127 VYKSFSNYDHAKSFLD 142


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 107 KIGKVFFNLV*FLNKMSEANVLVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTTK 283
           K G V   +V   NK+    +++ GG     A+ + ++  P V KI+  PG+  ++  K
Sbjct: 167 KDGTVAPEIVYIANKIGAEAIILAGGAQAIAAMAYGISGVPKVNKIF-GPGNQFVTAAK 224


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 138 YTKLKKTFPIFNRFFTCSLFKIIVSYNGKGLLFIY 34
           + + +   P+ + +F CSLFK I+  N   + F++
Sbjct: 513 FVRNQSGIPVRSIYFACSLFKEIIEANTNRVKFVH 547


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 205  KSVFPTTSAY-YQNVRFRHFI*KLHQIKENFSNF 107
            K V  +T AY Y N  +     +LHQ+K++F+ F
Sbjct: 1244 KKVLDSTEAYDYDNYYYEKKGNELHQLKDSFNGF 1277


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 478 VLVGLYLCTSFIWPK 434
           +L G++LC + +WPK
Sbjct: 664 LLAGIWLCINILWPK 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,825
Number of Sequences: 5004
Number of extensions: 73244
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)