Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1794
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical pr...   112   3e-25
U41996-7|AAA83476.1|  298|Caenorhabditis elegans Hypothetical pr...    31   0.96 
AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like ...    30   2.2  
Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like pr...    29   5.1  
AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical...    28   6.8  
U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AL032643-4|CAA21662.1|  436|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical
           protein F38B6.4 protein.
          Length = 974

 Score =  112 bits (269), Expect = 3e-25
 Identities = 54/121 (44%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
 Frame = +2

Query: 164 NVLVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTTKKVESIELDIKNYSALAQWCK 343
           NVL++G GGREHAL WK+  SP VK +  APG+ G S     E I+++  +  A+A +C+
Sbjct: 2   NVLIVGSGGREHALAWKMKQSPKVKNVIVAPGNGGHS-----ERIDINSNDLDAVADFCE 56

Query: 344 DNIIDLVVIGPEDPLAHGIVDGLVSY--GIPCFGPNKAGAQIEANKDWAKRFMNKYQIPT 517
            + I  V+IGPE+PL++G+ D L+     +  FGP K GAQ+E +K ++K FM +Y +PT
Sbjct: 57  KHNIHCVLIGPEEPLSNGLADHLIRIHPNLMVFGPLKDGAQLETSKSFSKHFMKEYGLPT 116

Query: 518 A 520
           A
Sbjct: 117 A 117


>U41996-7|AAA83476.1|  298|Caenorhabditis elegans Hypothetical
           protein F38E1.10 protein.
          Length = 298

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -3

Query: 198 CSRPPPPITKTFASDILFRNYTKLKKTF--PIFNRFFTCSLFKIIVSYNGKGLLFI---Y 34
           CS+PP  IT+T        N+ + K TF  P F     C    +I S + K ++F    Y
Sbjct: 181 CSKPPQLITQTIFDKQYAFNFPQTKFTFGTPSFTYTVGCQHVSMICSSSQKAIMFFNDQY 240

Query: 33  YIQGKN 16
            I G +
Sbjct: 241 IINGND 246


>AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like
           protein-15 protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 270 IPTLPGAQ*IFFTLGESASFQQRACSRPPPPITK 169
           IPT+        TL  ++SF+Q    RPPPP T+
Sbjct: 90  IPTMQSTASRISTLTAASSFRQLRTGRPPPPSTQ 123


>Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical
           protein T26E4.5 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 510 YRLPDISPSLMLQLPKSSLTGNLIF*NDRLIESTIIKAGNVTFGQLLVNQKNELLTLY 683
           Y +P ISP   + LP++S   N +  + +  +  +I A + TFG  L    N    +Y
Sbjct: 243 YTIPKISPEYSVILPQNSTPENDLAFSRQFYDVMLITAPSSTFGWWLSYLANRSAVVY 300


>U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like
           protein protein 15 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 270 IPTLPGAQ*IFFTLGESASFQQRACSRPPPPITK 169
           IPT+        TL  +++F+Q    RPPPP T+
Sbjct: 90  IPTMQSTASRISTLTAASTFRQLRTGRPPPPSTQ 123


>AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical
           protein B0511.2 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -3

Query: 243 IFFTLGESASFQQRAC-SRPPPPITKTFASDILFRNYTKLKKTFPIFNRFFTCSLFKIIV 67
           I+   G  A+   RA  +RPPPP+ K F    +F N T +     IF RFF   LF +++
Sbjct: 76  IYIPRGGKANVAARAAPARPPPPMVKNFDRINIF-NLTYML----IFLRFF---LFFLLI 127

Query: 66  SYNGKGLLFIYYIQGK 19
             N   + +I   +GK
Sbjct: 128 YANRFEIRWIKPDKGK 143


>U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical
           protein C07D10.1 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 428 EFHRKLSHLQYHEQEDLLGQSQLG 357
           E  +KLSHLQY    D +G S+ G
Sbjct: 171 EIFKKLSHLQYLRVYDFVGSSESG 194


>AL032643-4|CAA21662.1|  436|Caenorhabditis elegans Hypothetical
           protein Y54E5A.6 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 227 PNVKKIYCAPGSVGISTTKKVESIELDIKNYSALAQWCKDNIIDLVVIGPEDPL 388
           P    I+C  G+  ++ T+K+  I   +K+ + +   CK  ++D     PED L
Sbjct: 111 PKPFSIHCGMGAALLTQTEKIVDILTSLKSAAKVPVTCKIRVLD----DPEDTL 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,286,363
Number of Sequences: 27780
Number of extensions: 404010
Number of successful extensions: 1043
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)