Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1793
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 348 6e-97
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 169 4e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 158 7e-40
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 118 7e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 88 1e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 75 1e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 3e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.6
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 8.7
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.7
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 348 bits (855), Expect = 6e-97
Identities = 164/188 (87%), Positives = 173/188 (92%)
Frame = -1
Query: 750 YLMKILPERGXSFTTTAEREIVRDIKXKLCYVALDFEQXMATAASSSSLEKSYELPDGQV 571
YLMKIL ERG +F+TTAEREIVRDIK KLCYVALDFEQ + TAA SSSLEKSYELPDGQV
Sbjct: 188 YLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQV 247
Query: 570 ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 391
ITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYP
Sbjct: 248 ITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYP 307
Query: 390 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 211
GIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP
Sbjct: 308 GIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 210 SIVHRKCF 187
IV+RKCF
Sbjct: 368 GIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 169 bits (411), Expect = 4e-43
Identities = 80/188 (42%), Positives = 119/188 (63%)
Frame = -1
Query: 750 YLMKILPERGXSFTTTAEREIVRDIKXKLCYVALDFEQXMATAASSSSLEKSYELPDGQV 571
YL L + G ++AE+EIVR+IK K CYVA DF + + +Y+LPD Q
Sbjct: 193 YLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQT 252
Query: 570 ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 391
IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+
Sbjct: 253 ITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLR 312
Query: 390 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 211
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 210 SIVHRKCF 187
+++ R+ F
Sbjct: 372 NVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 158 bits (384), Expect = 7e-40
Identities = 81/191 (42%), Positives = 122/191 (63%), Gaps = 12/191 (6%)
Frame = -1
Query: 750 YLMKILPERGXSFTTTAEREIVRDIKXKLCYVALDFEQXMATAASSSSLEKSYELPDGQV 571
YL+ +L +G +F TA+ E VR++K KLCYV+ D E + ++ L ++Y LPDG+V
Sbjct: 188 YLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRV 247
Query: 570 ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 391
I +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VLSGG++MY
Sbjct: 248 IKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYA 307
Query: 390 GIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQM 247
G+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++ M
Sbjct: 308 GLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHM 367
Query: 246 WISKQEYDESG 214
W+SK E++E G
Sbjct: 368 WVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 118 bits (285), Expect = 7e-28
Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 11/148 (7%)
Frame = -1
Query: 624 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYN 472
A +SS K +E PDG G ERFR E LF PSF + G+HE Y
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 471 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYS 298
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 297 VWIGGSILASLSTFQQMWISKQEYDESG 214
VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 495 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 316
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 315 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 190
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 87.8 bits (208), Expect = 1e-18
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Frame = -1
Query: 750 YLMKILPERGXSFTTTAEREIVRDIKXKLCYVALDFEQXMATAASS--SSLEKSYELPD- 580
YL +++ R + E IV +IK +CYV+ +F++ M S LE Y LPD
Sbjct: 196 YLKEVISYR--KYNMMEETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDY 253
Query: 579 -----------------GQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDV 451
QV+ + NERF PE LF PS + + GI E S+
Sbjct: 254 STGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPE 313
Query: 450 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 271
+I+ L N V GG +PG R+ E+ +LAP+ ++K+ P + W S +
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM- 372
Query: 270 SLSTFQQMWISKQEYDESGPSIVHRK 193
L + I++ EY E G +I+ RK
Sbjct: 373 PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 74.9 bits (176), Expect = 1e-14
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Frame = -1
Query: 750 YLMKILPERGX--SFTTTAEREIVRDIKXKLCYVALDFEQXMATAASSSS--LEKSYELP 583
++ +L +R S TAER IK + CYV D + + L+ + E
Sbjct: 219 FVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESI 273
Query: 582 DGQVITI--GNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLS 412
G TI G ERF PE F P + + E N + +D+RK LY N VLS
Sbjct: 274 TGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLS 333
Query: 411 GGTTMYPGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSIL 274
GG+T++ +R+Q+++ + + + +I+ ++ +VW GGS+L
Sbjct: 334 GGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLL 393
Query: 273 ASLSTFQQMWISKQEYDESGPSIVHR 196
A F +K +Y+E G SI R
Sbjct: 394 AQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.1 bits (164), Expect = 3e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -1
Query: 555 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 376
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 375 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 202
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 441 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 271
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 270 SLSTFQQMWISKQEYDESGPSIVHRK 193
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 294 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 193
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 302 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 207
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 369 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 259
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -2
Query: 689 SFVTSXRSCATSLLTSSXKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNP 519
+F + S A SS + P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 412 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 233
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 232 GV 227
V
Sbjct: 534 AV 535
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -2
Query: 629 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS 465
PP+ +PS SL P S + + S R ++ +S + K + P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,159
Number of Sequences: 5004
Number of extensions: 61602
Number of successful extensions: 211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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