Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1792
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20...    34   0.15 
10_01_0332 - 3635909-3635912,3635947-3636003,3636004-3636053,363...    29   3.3  
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093           28   9.9  

>01_01_0027 -
           205450-206029,206706-207276,207408-207836,208438-208525
          Length = 555

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 299 SMLNFIYFIFIYLLGTQYTSQAKKYITNTSTKKQNWIILKLLDSCYI 439
           ++L F +F F ++L    T+ A    T+TS+    W I   LD C+I
Sbjct: 4   AILRFFFFFFFFILPASLTATAS---TSTSSCPDGWQITPALDKCFI 47


>10_01_0332 -
           3635909-3635912,3635947-3636003,3636004-3636053,
           3637887-3637945,3638054-3638114,3638938-3640479
          Length = 590

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 193 FFLNRCKIRYFYGSAYMVLTFNILR 119
           +FL  C  RYF+      LTF ILR
Sbjct: 563 YFLKSCNCRYFFAFCMGTLTFKILR 587


>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
          Length = 1040

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 633 VAQHFRLEQSDEAELCIVIVVHLKCNKWNSL 725
           VA+   L Q  + EL    ++H+ C++W S+
Sbjct: 47  VAERLTLGQITDPELRFEKIIHIDCSRWKSI 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,496,238
Number of Sequences: 37544
Number of extensions: 340532
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)