Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1792
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical ...    31   1.3  
AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical...    30   2.2  
Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans Na/Ca,K-excha...    29   5.1  

>AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical
           protein Y68A4A.7 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
 Frame = +2

Query: 287 LTVFSMLNFIYFIFIYLLGTQYTSQAKKYI--TNTSTKKQN 403
           L++FS+ N + F+ +YL+GT +TS +  Y+  + +ST  QN
Sbjct: 101 LSLFSVPNTVQFLIVYLMGT-FTSASYVYLFESRSSTLVQN 140


>AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical
           protein Y66D12A.17 protein.
          Length = 830

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +2

Query: 278 WLELTVFSMLNFIYFIFIYLLGTQYTSQAKKYITNTSTKKQNWIILKLLDSCYISNASDV 457
           WL+   F   N   +I+I  +  QYT  ++      + K Q WII   L+  Y  +  + 
Sbjct: 146 WLDELTFMNSNSFLYIWIKRVMMQYTRTSQNGTFEIAEKFQKWIISGTLEIMYEFSLKNC 205

Query: 458 D 460
           D
Sbjct: 206 D 206


>Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical
           protein F35C12.2a protein.
          Length = 596

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 432 QLSNNFKIIQFCFFVLVFVMYFLACDVYCVPN 337
           Q  N F ++  C  + +FV   + CD + VP+
Sbjct: 96  QRQNGFVVLHMCGLIYMFVSLAIVCDEFFVPS 127


>U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical
           protein C33G8.5 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 286 VNCFLNVKFYLFYFYLFIRHTIHITS*KI 372
           +N F+N   ++F+F+ FI  ++H  S K+
Sbjct: 239 LNMFINANCFVFFFFSFIGTSLHFNSSKM 267


>AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans
           Na/Ca,K-exchanger protein.
          Length = 596

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 432 QLSNNFKIIQFCFFVLVFVMYFLACDVYCVPN 337
           Q  N F ++  C  + +FV   + CD + VP+
Sbjct: 96  QRQNGFVVLHMCGLIYMFVSLAIVCDEFFVPS 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,308,502
Number of Sequences: 27780
Number of extensions: 354242
Number of successful extensions: 896
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)