Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1791
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 60 2e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 49 3e-06
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133... 36 0.045
04_04_0981 + 29912275-29912814 31 0.98
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 30 1.7
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 30 2.3
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 6.9
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 28 9.1
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 28 9.1
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 28 9.1
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/138 (26%), Positives = 71/138 (51%)
Frame = +2
Query: 269 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKG 448
SY Y +YF+ +GFAK F++ SD+ + L+K+ RGG++ S T
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLT 165
Query: 449 DKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVS 628
+ E G + A+ AL +K + E++ +H ++ +D ++T ++E EF+
Sbjct: 166 EFDH---PEKGDALYAMELALALEKLVNEKLHNLHSVASR----CNDPQLTDFVESEFLE 218
Query: 629 QQADTIRSLAGHTSDLKR 682
+Q + I+ ++ + + L+R
Sbjct: 219 EQVEAIKKISEYVAQLRR 236
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 49.2 bits (112), Expect = 3e-06
Identities = 38/146 (26%), Positives = 66/146 (45%)
Frame = +2
Query: 245 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDF 424
L S+ SY Y +YF+ +GFAK F++ SD+ + LIK+ RGG++
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRL 189
Query: 425 SSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQ 604
S T E H AL + A I+ + V +D ++T
Sbjct: 190 QSIVT--------PLTEFDHP--EKGDALYGELLSACPIYVFYSMVASR---CNDPQLTD 236
Query: 605 YIEEEFVSQQADTIRSLAGHTSDLKR 682
++E EF+ +Q + I+ ++ + + L+R
Sbjct: 237 FVESEFLEEQVEAIKKISEYVAQLRR 262
>11_06_0653 +
25911162-25911272,25911648-25911694,25912877-25913355,
25914089-25914249,25914324-25914519,25914745-25914807,
25914898-25915047,25915148-25915494
Length = 517
Score = 35.5 bits (78), Expect = 0.045
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = +2
Query: 101 LALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHY 280
L LGV+A ++ Q + +G + ++ Y + N + + L + + H
Sbjct: 181 LKLGVMAADERISQRIQEGITESFAVKDVRGYSTKKNLNPSPCDPVYKLNKIAMNGDRHK 240
Query: 281 LLSAS-------YFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGG 412
LL + + + Y + E K+ K+SD WE I + T R G
Sbjct: 241 LLEKNGIKTVGDFLSFYDRSPEDLRKILGKISDQDWETIISHAQKCTPRPG 291
>04_04_0981 + 29912275-29912814
Length = 179
Score = 31.1 bits (67), Expect = 0.98
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +1
Query: 16 SNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQ----TDFKSAA 183
S + + R+ I R + G+ S +G G GRG +++ + RP+ + F+ A
Sbjct: 59 SGSAAVVGRVYSLIERERRMGLRSRSVAAGGGGGGRG-IVVRDERPKSRAFGWVSFRKAT 117
Query: 184 LQRVLRPIQGQPRCSERTEGISLTVFETFLP 276
RV+ G R+ +S T ET P
Sbjct: 118 SDRVVEVDDG--AALARSSSVSATAVETRAP 146
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 43 IRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRM 159
IRH +N K+ C +SG C L++S R PRM
Sbjct: 739 IRHRVNLAKHTCTCREWQVSGKPCPHALALIISTRNPRM 777
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 709 SFPVVLGYXPLEVRGVTREATNRIG-LLTHEFLLDVLSDLGIVEEVAVFSDFPVDEENPL 533
S P LG P V + + +G ++ VL L + V SD+ ++E+NPL
Sbjct: 451 SIPAALGLDPTVANSVHQVINSSLGSVIPRNLQKSVLEGLFSIGRAQV-SDYILNEKNPL 509
Query: 532 GKLLL 518
G L L
Sbjct: 510 GSLRL 514
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 27 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 116
CY E + L++ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 91 RCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 243
+ ++G G +GRG ++ + PR + +A +R L +G +C + G
Sbjct: 87 KAVTGGGRSGRGLVVCCQMAPRRGGGERRSAQRRRLERRKGGDQCDDELSG 137
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Frame = +2
Query: 107 LGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLL 286
LGV+A ++ + + +G + ++ Y + N + + L+ + H LL
Sbjct: 184 LGVMAADERISERIQEGITESFAVKDVRGYLTKKNPNPSPRDAVYKLSKIAKNGDRHKLL 243
Query: 287 SAS-------YFNNYQTNREGFAKLFRKLSDDSWEKTI 379
+ + + Y + + K+ K+SD W+ I
Sbjct: 244 EQNGIKTVEDFLSFYNKSPDDLRKILGKISDQDWDLII 281
>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 700 VVLGYXPLEVR-GVTREATNRIGLLTHEFLLDVLSDLGIVEEVAVFSDFPVDEENPLGK 527
+V+ + +E G+TRE R+ +L + +S +GIV + V FP EE+ L K
Sbjct: 943 IVIHFQDIESELGLTREQLIRMAMLLGSDYTEGISGIGIVNAIEVAHAFP--EEDGLQK 999
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,126,658
Number of Sequences: 37544
Number of extensions: 405109
Number of successful extensions: 1167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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