Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1791
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    50   2e-06
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    45   5e-05
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    31   0.66 
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    31   0.66 
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   4.7  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    28   6.2  
U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 38/144 (26%), Positives = 65/144 (45%)
 Frame = +2

Query: 251 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 430
           ++ L  SY YL  + YF+         AK F++ SD+  E    L++    RGG++    
Sbjct: 21  NIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGRVVLQD 80

Query: 431 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 610
               + D       E G  + A   AL  +K   E +  +H     +    +DA +T +I
Sbjct: 81  IQKPEND-------EWGTALKAFEAALALEKFNNESLLKLHSTAGNH----NDAHLTDFI 129

Query: 611 EEEFVSQQADTIRSLAGHTSDLKR 682
           EE+++ +Q  +I   A   ++LKR
Sbjct: 130 EEKYLDEQVKSINEFARMVANLKR 153


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 35/141 (24%), Positives = 65/141 (46%)
 Frame = +2

Query: 260 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 439
           L  SY YL  +++F+         AK F++ SD+       L++    RGG++  +    
Sbjct: 24  LYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGRV--AMQNI 81

Query: 440 LKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEE 619
            K +K      E G  + A   AL  ++     +  +H    + +D    A +T YI+E+
Sbjct: 82  QKPEKD-----EWGTVLEAFEAALALERANNASLLKLHGIAEQRND----AHLTNYIQEK 132

Query: 620 FVSQQADTIRSLAGHTSDLKR 682
           ++ +Q  +I   A H +++KR
Sbjct: 133 YLEEQVHSINEFARHIANIKR 153


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = +2

Query: 419 DFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEI 598
           D S+HTT      S  TVE  H++ ++A ++ T  +  E + FI  +  + + L+  A  
Sbjct: 627 DSSAHTT----PISTRTVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALK 682

Query: 599 TQYIEEEFVSQQ-ADTIRSLAGHTSDLKRXITENNXE 706
           T +   E  S++ A+ IRS     + +   +++ + +
Sbjct: 683 TGWAAMEQASKKDAEVIRSHVDKLASIAEQLSKRHGD 719


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 554 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 682
           + V K  ++LH     Q  EE F +Q   TIR  A   +DLK+
Sbjct: 41  KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKK 83


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 124 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 219
           GRLML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +2

Query: 395  VTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNS 574
            +T+  G  D  S   L  D+G +    VG ++ ALA     +K   + +  I RE   + 
Sbjct: 4372 ITREDGGDDNKSPDELIDDRGRSTGSAVGDKLAALAAFNAARKNAEDALLDITREDGGDD 4431

Query: 575  DLLHDAEITQYI-EEEFVSQQADTIRSLAGHTSDLKRXITENN 700
            +   D  I     +EE V++  DT+  +     D K     N+
Sbjct: 4432 NKSPDELIDDLAKKEETVAKLLDTVSGVKPDELDDKERAEYND 4474


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 32/150 (21%), Positives = 63/150 (42%)
 Frame = +2

Query: 122 EEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYF 301
           + D+C  NV    + +L    CS   G+F+ +    +E+K+   + L ++   +      
Sbjct: 50  DSDNCSFNVHYITKESLFPTECSQIIGRFRIDQ--NSEMKSEQLITLFKNVLQIRGVLQI 107

Query: 302 NNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVG 481
            N Q     F K  + ++ D  +K + ++ + TK    ++ SS +       SN  VE+ 
Sbjct: 108 WNTQLTSAPFMKNIQNITGDPLDKGLSILNN-TKL-NNLNISSLS------NSNNIVEIK 159

Query: 482 HEIGALAKALDTQKQLAERIFFIHREVTKN 571
           +        L     +   +FF  R ++KN
Sbjct: 160 NNPNL---NLQKMCSIIHEVFFTRRSISKN 186


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 32/150 (21%), Positives = 63/150 (42%)
 Frame = +2

Query: 122 EEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYF 301
           + D+C  NV    + +L    CS   G+F+ +    +E+K+   + L ++   +      
Sbjct: 50  DSDNCSFNVHYITKESLFPTECSQIIGRFRIDQ--NSEMKSEQLITLFKNVLQIRGVLQI 107

Query: 302 NNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVG 481
            N Q     F K  + ++ D  +K + ++ + TK    ++ SS +       SN  VE+ 
Sbjct: 108 WNTQLTSAPFMKNIQNITGDPLDKGLSILNN-TKL-NNLNISSLS------NSNNIVEIK 159

Query: 482 HEIGALAKALDTQKQLAERIFFIHREVTKN 571
           +        L     +   +FF  R ++KN
Sbjct: 160 NNPNL---NLQKMCSIIHEVFFTRRSISKN 186


>U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical
           protein F20D12.7 protein.
          Length = 158

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 343 EELRESFPVRLVVVEVGGRQEIMVGTFQIQ*G 248
           EE+ E   V LV++ +GGR   +VGT ++  G
Sbjct: 87  EEITEPSSVLLVMITMGGRMANVVGTMKLYKG 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,624,253
Number of Sequences: 27780
Number of extensions: 319110
Number of successful extensions: 1016
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)