Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1788
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 163 1e-41
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 88 1e-18
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 86 4e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 75 7e-15
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.1
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 5.4
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 7.2
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 9.5
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 9.5
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 9.5
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 163 bits (397), Expect = 1e-41
Identities = 80/133 (60%), Positives = 93/133 (69%)
Frame = +2
Query: 176 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVXRKESESCDCLQGF 355
D+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDV R+E+E+CD LQGF
Sbjct: 74 DAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGF 133
Query: 356 QXXXXXXXXXXXXXXXXXXXKIREXYPDRXMNTYSVAPLAQSXTTLXVEPYNATLSXHQL 535
Q KIRE YPDR M T+SVAP +S T+ VEPYNATLS HQL
Sbjct: 134 QLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTV-VEPYNATLSMHQL 192
Query: 536 VEKXRTKTXCIDN 574
VE +T CIDN
Sbjct: 193 VEN-SDETFCIDN 204
Score = 46.4 bits (105), Expect = 4e-06
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +3
Query: 66 GTLTCSWERINVYYNEASGGKYVPRAIL 149
GT ER+NVY+NEA+GGKYVPRA+L
Sbjct: 38 GTSEAQHERLNVYFNEAAGGKYVPRAVL 65
Score = 33.9 bits (74), Expect = 0.020
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 10 FGTXALDEHGIDPTGAYHGXL*LAVGSASMYTTMKPPAASTCPAPFYVDLEPXTM 174
F + DEHG+D G YHG ++Y + P VDLEP TM
Sbjct: 20 FWSTIADEHGLDSAGIYHGTSEAQHERLNVYFN-EAAGGKYVPRAVLVDLEPGTM 73
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 87.8 bits (208), Expect = 1e-18
Identities = 47/146 (32%), Positives = 72/146 (49%)
Frame = +2
Query: 137 PRHXXXXXXXXXXDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVX 316
PR D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+
Sbjct: 67 PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERI 126
Query: 317 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREXYPDRXMNTYSVAPLAQSXTTLX 496
R+ +++C LQGF ++ Y + +SV P Q T++
Sbjct: 127 RRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSV- 185
Query: 497 VEPYNATLSXHQLVEKXRTKTXCIDN 574
VEPYN+ L+ H ++ T +DN
Sbjct: 186 VEPYNSVLTTHATLDNSDC-TFMVDN 210
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 86.2 bits (204), Expect = 4e-18
Identities = 47/146 (32%), Positives = 70/146 (47%)
Frame = +2
Query: 137 PRHXXXXXXXXXXDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVX 316
PR D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 63 PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKI 122
Query: 317 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREXYPDRXMNTYSVAPLAQSXTTLX 496
R+ +++C LQGF ++ Y + +SV P Q T++
Sbjct: 123 RRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSV- 181
Query: 497 VEPYNATLSXHQLVEKXRTKTXCIDN 574
VEPYN+ L+ H ++ T +DN
Sbjct: 182 VEPYNSVLTTHATLD-LADCTFMVDN 206
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 75.4 bits (177), Expect = 7e-15
Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Frame = +2
Query: 176 DSVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDSVLDVXRKESESCDCLQ 349
+++ S +G ++ P+N + ++G AGNNWA G Y+ + + ++D+ +E++ D L+
Sbjct: 75 NNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLE 133
Query: 350 GFQXXXXXXXXXXXXXXXXXXXKIREXYPDRXMNTYSVAPLAQSXTTLXVEPYNATLSXH 529
GF ++ + YP + + TYSV P +QS + + V+PYN+ L+
Sbjct: 134 GFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALK 193
Query: 530 QL 535
+L
Sbjct: 194 RL 195
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 260 AKGHYTEGAELVDSVLDVXRKESESCDCLQ 349
A+GH G ELV + D RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 191 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 292
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 333 LAIAYRASNLHIPSVAAPGPVWAPSSSQR 419
LA+ Y + + +V APG +W+P+ +R
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDER 186
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 89 LPTASQSXPW*APVGSMPCSSRAXVPN 9
LP A++ PW V P +++ VPN
Sbjct: 485 LPLANEFIPWSLEVEKQPVTTKLKVPN 511
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 280 LCVVSLGPVVAGAGLSEDEVVRTEDLSERSGADRVPW 170
+CV+ L + G+ +S + ++ + +R+G D +PW
Sbjct: 571 ICVIQLA--LEGS-ISRESIMNSLSRGQRAGGDLIPW 604
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 212 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVXRKESESCDC 343
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 46 PTGAYHGXL*LAVGSASMYTTMKPPAASTCPAPFYV 153
P Y G L + + T M+ P ST P P Y+
Sbjct: 438 PRRTYSGRLLCGPNNYEVSTIMRSPTISTVPPPKYL 473
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 369 PSVAAPGPVWAPSSSQRSVXSTPTXS 446
PS+A+ P P SSQ S S P S
Sbjct: 14 PSIASSFPTVKPFSSQNSTTSNPELS 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,779
Number of Sequences: 5004
Number of extensions: 39330
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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