Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1781
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.54 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   0.94 
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   2.9  

>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 489 RKPTNIFKKKRLIFDSLVKENTYKLTSNEECY-*SGSVLNY*NSRKVHPTLHNLTQCVTR 313
           RK T  +KKK  I D+ VK     L +NE  +  +G   +  N+ + +P+L +L + V  
Sbjct: 9   RKATLAYKKKHDIHDAPVKPRKKNLGNNEWRFKNAGEYFDEDNNEEEYPSLESL-KTVGN 67

Query: 312 *HTYQTERDITTYFEL 265
             T Q E +   Y +L
Sbjct: 68  GDTIQDEEEDFEYSKL 83


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 355 SSPDTPQPDTVRDTLAYIPDRTRYNDLFRTLNPLKARNTSDASDSAIGYSDATTTLTS 182
           S  +T  P  V  T++Y        D   T N   + ++   S S   YSD TTT+TS
Sbjct: 661 SLKETSSPAYVSSTVSYTSSSV---DSSSTYNSTGSSSSDSQSFSGTTYSDPTTTITS 715


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 295 RTRYNDLFRTLNPLKARNTSDASDSAIGYSDATTTLTSLPEIR 167
           R+R   +FR ++P+K      A DS    S  T+  + L  +R
Sbjct: 443 RSRLKQIFRLIDPVKTMQFQQAEDSIRSKSTVTSATSLLNWVR 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,395
Number of Sequences: 5004
Number of extensions: 52522
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)