Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1781
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029975-1|ABM92849.1|  237|Drosophila melanogaster IP18234p pro...    29   5.1  
AY058552-1|AAL13781.1|  508|Drosophila melanogaster LD24726p pro...    29   5.1  
AE014296-3711|AAF51855.3|  508|Drosophila melanogaster CG11241-P...    29   5.1  

>BT029975-1|ABM92849.1|  237|Drosophila melanogaster IP18234p
           protein.
          Length = 237

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 198 VASLYPIALSDASEVFRALSGFKVRNRSLYRVRSGMYANVSRTVSGCGVSGELFWSFNS 374
           VA+++  ++       +   G+  R  +L R   G++       +G G +GE FW F S
Sbjct: 11  VAAMFAESIQGVGGTVQFPKGYLKRAAALVRANGGLFV-ADEVQTGFGRTGEHFWGFES 68


>AY058552-1|AAL13781.1|  508|Drosophila melanogaster LD24726p
           protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 198 VASLYPIALSDASEVFRALSGFKVRNRSLYRVRSGMYANVSRTVSGCGVSGELFWSFNS 374
           VA+++  ++       +   G+  R  +L R   G++       +G G +GE FW F S
Sbjct: 277 VAAMFAESIQGVGGTVQFPKGYLKRAAALVRANGGLFV-ADEVQTGFGRTGEHFWGFES 334


>AE014296-3711|AAF51855.3|  508|Drosophila melanogaster CG11241-PA
           protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 198 VASLYPIALSDASEVFRALSGFKVRNRSLYRVRSGMYANVSRTVSGCGVSGELFWSFNS 374
           VA+++  ++       +   G+  R  +L R   G++       +G G +GE FW F S
Sbjct: 277 VAAMFAESIQGVGGTVQFPKGYLKRAAALVRANGGLFV-ADEVQTGFGRTGEHFWGFES 334


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,726,215
Number of Sequences: 53049
Number of extensions: 505965
Number of successful extensions: 1311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)