Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1780
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 33 0.027
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 4.1
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 4.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 4.1
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 26 4.1
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T... 26 5.4
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 7.2
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 7.2
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 33.5 bits (73), Expect = 0.027
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = -2
Query: 535 SNPRSXLSPFSPGNPGIPEGP*SPFCPGAPN----PVAPFSP 422
S P+ ++P +P P +P+ P +P P AP+ PVAP +P
Sbjct: 573 SVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAP 614
Score = 32.7 bits (71), Expect = 0.047
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 538 PSNPRSXLSPFSPGNPGIPEGP*SPFCPGAPN-PVAPFSP 422
PS P+ ++P +P P +P+ P P P AP+ P P +P
Sbjct: 602 PSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAP 641
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 538 PSNPRSXLSPFSPGNPGIPEGP*SPFCPGAPN-PVAPFSP 422
PS P+ +P P P +P+ P P P AP+ P P +P
Sbjct: 632 PSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAP 671
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 263 SNGSRESIKPTHPHFSFL 210
SN S S KP+HP SFL
Sbjct: 805 SNNSSNSFKPSHPSQSFL 822
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 395 WYYWGKRRSRREGGHWVWCT 454
+YY G + GHWVW T
Sbjct: 1071 FYYDGPNKDGLASGHWVWGT 1090
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +3
Query: 447 GAPGQKGDQGPSGIPGLPGEKGDKXDRG----LDGLPWSNRTDWSAXSE 581
G+P GD+ G P GE + D DG+P N D + SE
Sbjct: 8 GSPTTNGDKNEDGYPAENGEGTNVDDNNNEEEKDGIPLDNDNDENDSSE 56
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 318 VLFHLGAQVLLEDHDFLFLQWVPRVHQTHASPFLLFGQD 202
+L H GAQVL +DF + R+ + H S + +G D
Sbjct: 250 ILMHRGAQVLRISNDFSSIDASKRIFKEHES--MCYGGD 286
>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 423 GEKGATGFGAPGQKGDQG 476
G GA+G G+ G++GD+G
Sbjct: 171 GAGGASGIGSSGRRGDRG 188
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -2
Query: 553 FDQGNP--SNPRSXLSPFSPGNPGIP 482
FD GN NP + P +P NPG P
Sbjct: 576 FDSGNDWHGNPSTVPPPTNPYNPGYP 601
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -1
Query: 359 WWPCQTFITLITLLSFF 309
WWPC+T + + L F
Sbjct: 83 WWPCKTTVVCLILFLLF 99
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 541 NPSNPRSXLSPFSPGNPGIPEGP*SPFCPGAPNPVAPFSPR 419
+P S P P + G+P P S P N ++P+S R
Sbjct: 21 DPFRQPSMNLPTPPHDDGLPSIPRSTALPNLSNRLSPYSHR 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,434
Number of Sequences: 5004
Number of extensions: 44398
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -