Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1780
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 33 0.15
07_03_1160 - 24430240-24431268 33 0.15
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 32 0.46
06_01_0624 + 4542344-4543447 31 0.60
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 31 1.1
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 1.8
01_01_1143 - 9064210-9065682 29 2.4
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 29 3.2
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 29 4.2
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 28 5.6
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 28 5.6
07_01_0974 + 8211602-8212051 28 5.6
01_01_0130 + 1182504-1182817,1183024-1183152,1183582-1183716,118... 28 5.6
12_01_0653 + 5521635-5522387 28 7.4
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736... 28 7.4
04_04_1666 + 35202970-35203163,35203615-35203677,35204834-35205815 28 7.4
10_08_0399 - 17614585-17614809,17614860-17615168 27 9.8
05_03_0255 + 11100083-11100158,11100244-11100391,11101372-111015... 27 9.8
03_06_0416 - 33780911-33781861 27 9.8
03_05_1130 + 30602452-30602712,30603033-30603950,30605501-306055... 27 9.8
01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535 27 9.8
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 33.5 bits (73), Expect = 0.15
Identities = 30/102 (29%), Positives = 34/102 (33%)
Frame = +3
Query: 225 GMRGFDGLSGPIGEKGNRGPQGVPGLPGEKGQKGDQGNEXXXXXXXXXXXXXXXXXXXXX 404
G GF G GP G G GP G G G G G +
Sbjct: 1044 GPGGFGGRDGPGGFIGREGPGGFGGREGPVGFGGQE--SPGGFGGRKGPGAFEGREGAAP 1101
Query: 405 XEKGDRGEKGATGFGAPGQKGDQGPSGIPGLPGEKGDKXDRG 530
G RG +G GFG +G P G G G +GD G
Sbjct: 1102 GSFGGRGGRGPGGFGG---RGGGSPGGFGG-RGGRGDSHGFG 1139
>07_03_1160 - 24430240-24431268
Length = 342
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = -2
Query: 550 DQGNPSNPRSXLSPFSPGNPGIPEGP*SPFCPGAPNPVAPFSP 422
DQ NP P P P IP GP P P PNP P P
Sbjct: 213 DQSTQPNPNGPSIPNQPPQP-IPNGPIKPDQPPQPNPDMPPKP 254
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -2
Query: 559 VRFDQGNPSNPRSXLSPFSPGNPGIPEGP*SPFCPGAPNPVAPFSP 422
++ DQ NP P P P P+GP P P PNP P P
Sbjct: 238 IKPDQPPQPNPDMPPKPDQPPQP-CPDGPPKPDQPPQPNPNGPPKP 282
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -2
Query: 550 DQGNPSNPRSXLSPFSPGNPGIPEGP*SPFCPGAPNPVAPFSP 422
DQ NP P P P P GP P P PNP P P
Sbjct: 269 DQPPQPNPNGPPKPDQPPQPN-PNGPSKPDQPPRPNPDMPPKP 310
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = -2
Query: 568 DQSVRFDQGNPSNPRSXLSPFSPGNPGIPEGP*SPFCPGAPNPVAPFSP 422
D + DQ P P P P P GP P P PNP P P
Sbjct: 249 DMPPKPDQPPQPCPDGPPKPDQPPQPN-PNGPPKPDQPPQPNPNGPSKP 296
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 535 SNPRSXLSPFSPGNPGIPEGP*SPFCPGAPNPVAP 431
+N S LSP P PG P P P PG P P P
Sbjct: 912 ANTASALSPPPPRPPGAPPPPPPPGKPGGPPPPPP 946
>06_01_0624 + 4542344-4543447
Length = 367
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 384 VVQLDXQDLVALPNLHYPD-HPFVLFHLGAQVLLEDHD 274
+++ D LV +PNLH P P L+ GA++ L+D D
Sbjct: 96 LLEADTSRLVVMPNLHKPKLEPIALYIPGAEIDLDDLD 133
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 544 GNPSNPRSXLSPFSPGNP-GIPEGP*SPFCPGAPNPVAP 431
G PR + P +PG P G+P+ P +P PG P+ P
Sbjct: 79 GGVPRPRLPILP-TPGMPLGVPQVPGAPLMPGVRPPILP 116
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 535 SNPRSXLSPFSPGNPGIPEGP*SPFCPGAPNPVAP 431
+N S L P P PG P P P PG P P P
Sbjct: 607 ANTASALPPPPPRPPGAPPPPPPPGKPGGPPPPPP 641
>01_01_1143 - 9064210-9065682
Length = 490
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 432 GATGFGAP--GQKGDQGPSGIPGLPGEKG 512
GA G G P G G SG+PG+PG G
Sbjct: 436 GANGSGLPNPGASAGLGSSGLPGMPGAGG 464
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 222 MGMRGFDGLSGPIGEKGNRGPQGVPGLPGEKGQKGDQG 335
+G G GL P G G G+PG+PG G G G
Sbjct: 435 VGANG-SGLPNP-GASAGLGSSGLPGMPGAGGYLGGYG 470
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 441 GFGAPGQKGDQGPSGIPG--LPGEKGDKXDR 527
G G PG G QG G PG PG GDK DR
Sbjct: 2 GQGTPGGMGKQG--GAPGDRKPGGDGDKKDR 30
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 643 NLSXLVHLVXPGLAGIGXDHLSDXADQSV-RFDQGNPSNPRSXLSPFSPGNPGIPEGP*S 467
+L + LV G+ G + SD + +V R P P SP +P P GP
Sbjct: 3 SLRRFLELVVVGIVVCGVNGGSDGLEVAVARRQLHQPFFPDQSSSPPTPA----PPGPAP 58
Query: 466 PFCPGAPNPVAP 431
PF P P P P
Sbjct: 59 PFFPALPVPPPP 70
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 538 PSNPRSXLSPFSPGNPGIPEGP*SPFCPGAPNPVAPFSP 422
P+ P + S P P +P P SP PG P P SP
Sbjct: 55 PAAP-APTSGSGPAAPSMPANPASPATPGPPRPQFAGSP 92
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 502 PGNPGIPEGP*SPFCPGAPNPVAPFSP 422
P P GP +P P +P PVAP P
Sbjct: 503 PIGSAAPLGPVAPIGPVSPGPVAPLGP 529
>07_01_0974 + 8211602-8212051
Length = 149
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 544 GNPSNPRSXLSPFSPGNPGIPEGP*SPFCPGAPNPVAP 431
G PS P + P P N G P +P PG N AP
Sbjct: 64 GGPSPPTNPAPPAVPCNCGTTTAPAAPSPPGVYNYSAP 101
>01_01_0130 +
1182504-1182817,1183024-1183152,1183582-1183716,
1184296-1184392,1184633-1184736,1184924-1184975,
1185261-1185458
Length = 342
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 456 GQKGDQGPSGIPGLPGEKGDKXDRGLDGLPWSNRTDWSA 572
G G G PG PGE DR + WS ++D+ +
Sbjct: 21 GGGGGGAGGGPPGPPGEMASDDDRSVAADSWSIKSDYGS 59
>12_01_0653 + 5521635-5522387
Length = 250
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 252 GPIGEKGNRGPQGVPGLPGEKGQKGDQGN 338
G IG +G+ PQGV G PG+ Q GN
Sbjct: 112 GSIGNQGDN-PQGVHGAPGDVAQGLQGGN 139
>08_02_0193 -
14073103-14073246,14073332-14073481,14073571-14073640,
14073900-14074021,14074260-14074395,14074492-14074967
Length = 365
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 517 LSPFSPGNPGIPEGP*SPFCPGAPNPVAPF 428
LS SP P PE CP P+PVAP+
Sbjct: 25 LSALSPPPPTTPES-----CPDGPSPVAPY 49
>04_04_1666 + 35202970-35203163,35203615-35203677,35204834-35205815
Length = 412
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 479 GTLITFLPWCTKPSGPLLSSI 417
G ++ L WC K GPL +S+
Sbjct: 271 GVMLVVLSWCVKRRGPLFASV 291
>10_08_0399 - 17614585-17614809,17614860-17615168
Length = 177
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 411 KGDRGEKGATGFGAPGQKGDQGPSGIPGLPGEKG 512
KG RG G G G G G LPGE+G
Sbjct: 74 KGKRGGGGGAGAREGGGGGGGGAVAAASLPGERG 107
>05_03_0255 +
11100083-11100158,11100244-11100391,11101372-11101559,
11101648-11101819,11102637-11102839,11103640-11103762,
11103838-11103941,11105579-11105713
Length = 382
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 321 FVLFHLGAQVLLEDHDFLFLQWVPRVHQTHASPFLLFGQD 202
FV+F + +LE + ++ +H+T PFL FG D
Sbjct: 225 FVIFVVNGASVLESIENNNKNYIDMLHKTFMYPFLSFGDD 264
>03_06_0416 - 33780911-33781861
Length = 316
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 544 GNPSNPRSXLSPFSPGNP--GIPEGP*SPFCPGAPNPVAPFSPR 419
G PS R ++P SP P IP P +P AP P P +PR
Sbjct: 23 GTPS--RLAVAPPSPTTPQCAIPASPHTPGRGRAPPPATPRAPR 64
>03_05_1130 +
30602452-30602712,30603033-30603950,30605501-30605548,
30605629-30606072
Length = 556
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 417 DRGEKGATGFGAPGQKGDQGPSGIPGLPGEKGDKXDRGLD 536
DRG G+P Q GD+ G G KG + L+
Sbjct: 279 DRGNLSTANEGSPNQDGDKKEEGEGSRRGSKGTRKKMALE 318
>01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535
Length = 263
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 39 GPKGDKGDAGLAAEKG 86
G KGDKGD G A +KG
Sbjct: 93 GAKGDKGDGGDAGDKG 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,160
Number of Sequences: 37544
Number of extensions: 315705
Number of successful extensions: 1178
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -