Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1780
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    31   0.013
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.63 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.84 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 225 GMRGFDGLSGPIGEKGNRGPQGVPGL 302
           G++G  G+ G  G +G +G QGVPGL
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPGL 877



 Score = 28.7 bits (61), Expect = 0.052
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 231 RGFDGLSGPIGEKGNRGPQGVPGLPG 308
           +G  G+ G  G +G +G QGV G+PG
Sbjct: 851 QGVQGVQGVQGVQGVQGVQGVQGVPG 876


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 439 LGLVHQGKKVIKVPQVYQDYLVRKVIXEIVD*MDYPGRTGPIGPPXQK 582
           L L H+G +  +VP + +  ++ K+   ++       R+ P+ PP +K
Sbjct: 297 LNLHHRGVRGTRVPGIVRSLVLDKLARIVLLNFQEERRSEPVEPPRRK 344


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 459  QKGDQGPSGIPGLPGEKGDKXDRGLDGLPWSNRTDWS 569
            QK    P GIPG  G K      G+  LP++    W+
Sbjct: 1129 QKPFTSPGGIPGPNGIKMPSFMEGMPHLPFTPFNFWN 1165


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 264 LQWVPRVHQTHASPFLLFGQDTQVFLDQVF 175
           L W+PR H  H    ++ G + +   D  F
Sbjct: 40  LNWLPRTHYDHLKEIVIGGFEIEKSEDDSF 69


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +3

Query: 411 KGDRGEKGATGFGAPGQKGDQGPSGIPGLPGEKGDKXDR 527
           +G  G +G TGF    + GD          G + ++ DR
Sbjct: 92  RGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDR 130


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 613 PGLAGIGXDHLSDXADQSVRFDQGNP 536
           PG  G+  DH      Q+VRF   +P
Sbjct: 271 PGPPGVPGDHGDHAPKQTVRFKVHDP 296



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 273 NRGPQGVPGLPGEKGQK 323
           N GP GVPG  G+   K
Sbjct: 270 NPGPPGVPGDHGDHAPK 286



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 483 GIPGLPGEKGD 515
           G PG+PG+ GD
Sbjct: 272 GPPGVPGDHGD 282


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 273 NRGPQGVPGLPGEKGQK 323
           N GP GVPG  G+   K
Sbjct: 331 NPGPPGVPGDHGDHAPK 347



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 483 GIPGLPGEKGD 515
           G PG+PG+ GD
Sbjct: 333 GPPGVPGDHGD 343


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 273 NRGPQGVPGLPGEKGQK 323
           N GP GVPG  G+   K
Sbjct: 331 NPGPPGVPGDHGDHAPK 347



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 483 GIPGLPGEKGD 515
           G PG+PG+ GD
Sbjct: 333 GPPGVPGDHGD 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,599
Number of Sequences: 438
Number of extensions: 3229
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)