Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1777
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    29   4.7  
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.2 protein.
          Length = 346

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
 Frame = +3

Query: 423 NFNQILSSFSVSE----NLFLSFSY-LAVSYYLLFYSYIHM*FIKKYK*SFHAT 569
           N+N+ L  FS+++    N FL  +  + +++YLL  S+I + F+ +Y   FH+T
Sbjct: 67  NYNRALILFSINDWIPSNNFLEIAIPIWMTFYLLIISFIGIQFVYRYLCLFHST 120


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
 Frame = +3

Query: 414 F*INFNQILSSFSVSENL----FLSFSY-LAVSYYLLFYSYIHM*FIKKYK*SFHAT 569
           F +N+N+ +  FS+++ +    FLS +    +++YLL  S + + F+ +Y   FH+T
Sbjct: 64  FTLNYNRAVILFSINDWILSKNFLSIALSFWITFYLLIISLVGVQFVYRYLYIFHST 120


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
           protein Y110A7A.16 protein.
          Length = 1250

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 128 YWSFET*LIYVWLAINCK-IKIMYKFGYFF 42
           YW F   +I+ W  + C+ I+++ + G FF
Sbjct: 328 YWKFSESIIWKWSTVECQNIEVLLESGQFF 357


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = +3

Query: 423 NFNQILSSFSVSENLFL-SFSYLAVS----YYLLFYSYIHM*FIKKYK*SFHA 566
           N+N+ L  FS+++ +   SF  +A+S    +YLL  S+I + F+ +Y   FH+
Sbjct: 67  NYNRALILFSINDWISSKSFLEIAISVWMTFYLLIISFIGIQFLYRYICLFHS 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,740
Number of Sequences: 27780
Number of extensions: 268300
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)