Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1776
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    29   0.77 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    28   1.8  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    27   2.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   4.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.4  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   9.5  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   9.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.5  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +2

Query: 476 GDALINCVNVDVEIESKLNQVKDNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKELAD 655
           GD     +N   EI S  + +    GK  LKL   S+   +     + KNL +G  +  +
Sbjct: 698 GDVEFYFINGSQEIPSLFHSIWIMTGKG-LKLWL-SFSEILSSVLINTKNLIDGLPKFLN 755

Query: 656 TTLQFANENWQQL-MDDLAPPA 718
           T+ + + EN+ +L ++DL  P+
Sbjct: 756 TSKRVSLENFHRLSVEDLRSPS 777


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 200 KSLPEFTKGIPELDVPSTDPVHLDDINIDGNGL 298
           + LP+ T+  P+L +P+ + V  D++ +D NG+
Sbjct: 27  EKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGI 59


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 503 VDVEIESKLNQVKDNNGKDHLK--LGTPSYKYKIEKTTFD 616
           VDV++ SK+NQ+ D      L   +GTPS  +  E    D
Sbjct: 34  VDVDLVSKVNQLYDQQIAPMLSDAIGTPSVNHSFELAPLD 73


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 44  SAVSRTMMLIALFLFAAHVFNTNADDAY-LPPYIEACEFSNENLEQCIKEQIEKSLPEFT 220
           S+V ++++L   F ++ H  N N +    L  +I     S     +C++    K LP F 
Sbjct: 547 SSVKQSLLLDGFFRWSQHCSNFNKESMLSLREFIMKALASTS---RCLRVVAAKVLPIFI 603

Query: 221 KGIPELDV 244
           KG   LD+
Sbjct: 604 KGPNNLDI 611


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 239 DVPSTDPVHLDDINIDGNGLKLTFTKALM 325
           D+P++D V ++ IN   N L +   KALM
Sbjct: 468 DLPASDDVQIEFINFFLNNLSILTEKALM 496


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 550 RKRSFKTRHSFIQIQDREDYVRFEKLV 630
           +KR    RHS  Q++D ED V  E +V
Sbjct: 16  KKRLLSRRHSSYQVRDEEDDVLEEFIV 42


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 232 RNTLRKLRQTLLYLFFDALFEVFIGEFAGFNVW 134
           +NTLRK  +  + +    +F   +G+F+  + W
Sbjct: 331 KNTLRKNNKDFVCVLMSEIFPSRLGQFSDIDAW 363


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 476  GDALINCVNVDVEIESKLNQVKDNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKELA 652
            G+   N V + V++ SKL    D   + HLK    SYK  +E     L  +   N+ L+
Sbjct: 1059 GEKCANIVQLQVDLLSKL---ADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKETNERLS 1114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,879
Number of Sequences: 5004
Number of extensions: 65127
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)