Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1776
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0463 - 16200690-16200986,16202010-16202258,16202562-162026... 32 0.46
07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545... 31 0.81
05_06_0260 + 26736631-26736771,26736850-26736981,26737066-267372... 31 1.4
11_06_0102 + 20112731-20112928,20113314-20113514,20113606-201136... 30 1.9
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 29 3.3
05_01_0299 - 2322204-2322734,2324089-2326164 29 3.3
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571... 29 4.3
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 29 4.3
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 28 7.5
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 28 7.5
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 7.5
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 28 9.9
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 28 9.9
>04_03_0463 -
16200690-16200986,16202010-16202258,16202562-16202697,
16203150-16203368,16204137-16204515,16205010-16205253
Length = 507
Score = 32.3 bits (70), Expect = 0.46
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Frame = +2
Query: 23 LIFQSKXSAVSRTMMLIALFLFAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEK 202
++F + SA++R +I + A + + D+Y I+ C NE +++ E
Sbjct: 235 VVFYEEDSALAR---MIFTKIIAFIILMDDTYDSYAT--IQECRKLNEAIQRW-DESATA 288
Query: 203 SLPEFTKGIPE--LDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDG 376
LPE+ K L +H++D DG ++ TK L +L+E + +
Sbjct: 289 FLPEYIKKFYSALLKTFKEFEIHVED---DGQ-YRIDHTKKAFQNLSAYYLQEAEWSYQ- 343
Query: 377 DHGNFKLAFISNMSLTAEYEADGKLLILQINGKGDALIN 493
N+K +F ++L+ L + G+GDAL N
Sbjct: 344 ---NYKPSFEEQVALSTVTSTVPLLCVSTTVGRGDALTN 379
>07_01_0714 -
5451246-5451408,5453401-5453534,5453608-5453796,
5454313-5454825,5455815-5456856,5457283-5457380,
5458224-5458451
Length = 788
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 726 CLIAGGARSSMSCCQFSLANCRVVSANSL 640
C AGG R++ C Q SL +C ++ A L
Sbjct: 352 CAAAGGLRAAAECVQISLGHCSLLEARGL 380
>05_06_0260 +
26736631-26736771,26736850-26736981,26737066-26737248,
26737344-26737370,26737482-26737689,26737863-26737944,
26738097-26738205,26738324-26738443,26738567-26738884
Length = 439
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -3
Query: 309 NVSFNPLP--SMLMSSRCTGSVEGTSSSGIPFVNSGRLFSICSLMHCSRFSLENSQASMY 136
N S N +P S S+ G + T +G F+ CS+ SLEN +M
Sbjct: 323 NSSSNEIPCGSKNGSAVTVGEISYTDITGTSASERAVTFACSEAAPCSKLSLENVNITMA 382
Query: 135 GGRYASS 115
GG+ AS+
Sbjct: 383 GGQNASA 389
>11_06_0102 +
20112731-20112928,20113314-20113514,20113606-20113695,
20114269-20114457,20115375-20115387,20115824-20115990,
20117334-20117522,20118940-20119053,20120912-20121010,
20122368-20122490,20122579-20122701,20123179-20123277,
20124786-20124842,20125136-20125182,20125296-20125439,
20125540-20125717,20126318-20126398,20126480-20126563,
20126624-20126629
Length = 733
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 572 GTPSYKYKIEKTTFDLKNLFNGNKELADTTL--QFANENWQQLMDDLAPPAIKQI 730
GTP + +E+ D + E AD + QFA EN Q D PPA+ ++
Sbjct: 33 GTPEDRANVERVRRDFTDHRLRRPESADLLMRMQFARENNHQRRGDRIPPAVNKL 87
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 668 FANENWQQLMDDLAPPAIKQIXXTVVKRSTNLRERPTQQL 787
F + + ++MD AIK+I V++RS + R T++L
Sbjct: 1396 FGSLQYSKIMDMALDKAIKEIIGPVIQRSVTIASRTTKEL 1435
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -3
Query: 459 KMRSFPSASYSAVKLMLLM----KANLKFPWSPSNLSLNSFR*LPFKPCINALVNVSFNP 292
K RSF ++ S++K + A++K P P +LS LP P +A ++ + NP
Sbjct: 404 KCRSFSDSTTSSLKASSKVGKGFSASMKGPEVPPDLSFTGAA-LPSNPSFDAKLSSNLNP 462
Query: 291 LPS 283
LP+
Sbjct: 463 LPA 465
>09_03_0166 +
12956794-12956832,12956936-12956977,12957084-12957149,
12957237-12957350,12957435-12957515,12957613-12957690,
12958702-12958784,12959645-12959726,12959801-12959901,
12960016-12960055,12960162-12960221,12960302-12960348,
12960437-12960575,12960716-12960931,12961010-12961344,
12961525-12961596,12962449-12962589,12962680-12962716,
12962837-12963256
Length = 730
Score = 29.1 bits (62), Expect = 4.3
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Frame = +2
Query: 491 NCVNVDVEIESKLNQVKDNNGKDHLKLGTPSYKYKIEKTTFDLKNLFN-GNKELADTTLQ 667
+C + DV ESK+ D D KL TP Y+ + N N GN ++AD T
Sbjct: 377 SCEDDDVLTESKIKAFLDEKALDLKKLQTPLYE--------EFYNTVNAGNSQVADHTSN 428
Query: 668 FANENWQQLMDDLAPPAIKQ----IXXTVVKRSTNLR-ERPTQQLSKDT 799
N +L P K + S N R E + QLS+DT
Sbjct: 429 GIFSNSPKLPPRGKSPTSKMRGGAAAASTCDNSNNTRPESCSNQLSEDT 477
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 380 HGNFKLAFISNMSLTAEYEADGKLLILQINGKGDALINCVNVDVEIESKLNQVKDNNGKD 559
+G ++AF + L A E K L+ + +GKG + V VEI L ++NN D
Sbjct: 88 YGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKGADFVRAVKEIVEIYDSLKN-ENNNKSD 146
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 86 FAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLP 211
FA H++N DAY P + C +N ++ + + ++I K +P
Sbjct: 259 FAQHLYNDKRTDAYFPIKVWVCVSTNFDVLR-LTQEILKCIP 299
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +2
Query: 578 PSYKYKIEKTTF----DLKNLFNGNKELADTTLQ 667
P YK+K+E+T F + + FNG +++ +LQ
Sbjct: 187 PEYKFKVERTNFFPQPKVNSAFNGKRKMLRKSLQ 220
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +2
Query: 32 QSKXSAVSRTMMLIALFLFAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKS 205
Q K +VS + L + A ++ ++A AY AC F N Q + E S
Sbjct: 599 QDKKKSVSNERSSVVLSVEAQNMDGSSASTAYTSCCTPACNFENAETNQAVSVPSENS 656
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 107 TNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLPEFTKGIPEL 238
++ADDA P Y+E + +C+KE I++ P + + EL
Sbjct: 641 SSADDALRPRYMECLDRMANIAIRCLKEDIDER-PTMAEALEEL 683
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 509 VEIESKLNQVKDNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKE 646
V + + + D+NGK+ G S K++ E +F K +F+ ++E
Sbjct: 193 VRVRKTMAETHDSNGKESANDGIKSDKFETENFSFLPKLIFDRHEE 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,467,624
Number of Sequences: 37544
Number of extensions: 398785
Number of successful extensions: 1006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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