Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1776
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    33   0.31 
Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine rece...    28   6.8  
U40417-6|AAA81415.2|   90|Caenorhabditis elegans Saposin-like pr...    28   8.9  

>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 557 DHLKLGTPSYKYKIEKTTFDLKNLFNGNKELADTTLQFAN--ENWQQLMDDL 706
           D++K+GT   KYK +K T D  N +   K   D TL++      W  + +D+
Sbjct: 202 DYVKIGTHQTKYKDDKMTSDKCNEYAQEKSTDDKTLKYLTLCGEWCMVSEDM 253


>Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 266 LDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGN 388
           +++++++G   +L F + LM  L   +LK  K+ F GDH N
Sbjct: 341 IENLDLEGKS-ELEFIE-LMRYLDEKNLKRLKISFSGDHDN 379


>Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 266 LDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGN 388
           +++++++G   +L F + LM  L   +LK  K+ F GDH N
Sbjct: 341 IENLDLEGKS-ELEFIE-LMRYLDEKNLKRLKISFSGDHDN 379


>U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine
           receptor, class sx protein34, isoform c protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 528 NLLSISTSTFTQLMRASPFPLICKMRSFPSASYSAVK--LMLLMKANLKFPWSPSNLSLN 355
           +L+S S  TF QL+    +  I  + +F    Y+ +   + L M +     WS SN++LN
Sbjct: 114 SLVSYSLYTFLQLVFPFIYTSIFLLFAFLEVDYTPMTCAIPLAMGSKTFVTWSFSNMALN 173

Query: 354 SF 349
           +F
Sbjct: 174 AF 175


>U40417-6|AAA81415.2|   90|Caenorhabditis elegans Saposin-like
           protein family protein6 protein.
          Length = 90

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 566 KLGTPSYKYKIEKTTFDLKNLFNGNKELADTTLQFANENWQQLMDDLAPPAIKQI 730
           KL   S     +K T D+K  F+   + A  ++QFA    +  +D    P IK++
Sbjct: 19  KLAVKSADGDADKDTNDIKKDFDAKCKKAFHSIQFAPRECEHYVDKKLDPIIKEL 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,267
Number of Sequences: 27780
Number of extensions: 366762
Number of successful extensions: 1185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)