Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1775
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    28   7.4  
AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine re...    27   9.8  

>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 418 SHIINRTLNSFSDRIYEQTQCCSLLKSRQNLKKIK 522
           + +I+  +N+ +DRIY +   C L++   N  +IK
Sbjct: 82  NQVIHSVINTKTDRIYSKCLQCELIREMVNYVQIK 116


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 418 SHIINRTLNSFSDRIYEQTQCCSLLKSRQNLKKIK 522
           + +I+  +N+ +DRIY +   C L++   N  +IK
Sbjct: 82  NQVIHSVINTKTDRIYSKCLQCELIREMVNYVQIK 116


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 418 SHIINRTLNSFSDRIYEQTQCCSLLKSRQNLKKIK 522
           + +I+  +N+ +DRIY +   C L++   N  +IK
Sbjct: 82  NQVIHSVINTKTDRIYSKCLQCELIREMVNYVQIK 116


>AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 24 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 171 CCITPCLMFTLSTFKMLIYSCYILNF*IRYVRLISR 278
           C +  C +   +T+KM+I++C  +   +  ++LIS+
Sbjct: 165 CALNDCFLQYWTTYKMIIFACTFIFTILLSLKLISK 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,546,472
Number of Sequences: 27780
Number of extensions: 283913
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)