Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1775
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   6.4  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   6.4  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   8.5  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  NDYLYCKYI*LRNN*HANYK 93
           N+Y Y  Y    NN + NYK
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  NDYLYCKYI*LRNN*HANYK 93
           N+Y Y  Y    NN + NYK
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  NDYLYCKYI*LRNN*HANYK 93
           N+Y Y  Y    NN + NYK
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  NDYLYCKYI*LRNN*HANYK 93
           N+Y Y  Y    NN + NYK
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  NDYLYCKYI*LRNN*HANYK 93
           N+Y Y  Y    NN + NYK
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  NDYLYCKYI*LRNN*HANYK 93
           N+Y Y  Y    NN + NYK
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  NDYLYCKYI*LRNN*HANYK 93
           N+Y Y  Y    NN + NYK
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +2

Query: 407 GNWTAIL*IEHSTVFPTEFMSKHN 478
           G+W +++  + + +FP + +  HN
Sbjct: 3   GDWGSVIASDMAVLFPEKIIGLHN 26


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 174 CITPCLMFTLSTFK 215
           C T C+M  L TFK
Sbjct: 67  CYTTCIMKLLRTFK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,915
Number of Sequences: 438
Number of extensions: 3929
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)