Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1773
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    30   0.32 
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    27   2.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   3.9  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    27   3.9  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   9.1  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -2

Query: 427 KTNTASTVLDSGILDVIYDPQDLRVRPSGL--DQLKRLRGVPRDWPISSNVSCAWPLYFY 254
           K   ++TV+DS  L+V  D  +  V+       +L+RL+ +     +   + C W LYF 
Sbjct: 37  KNQFSTTVIDSSDLNVFNDGAETTVKEQEFTSSELRRLQKLRLKMDLRI-IPCLWILYFL 95

Query: 253 YTCL 242
             CL
Sbjct: 96  SCCL 99


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 522 KPRCVAANTRRKGEDSKIHDISTERDPSAACSRRIQQAPSWTV 394
           KP  +   T  + +++   DIST RDP A  S R+Q+ P W V
Sbjct: 127 KPVFIRHRTPEEIQEANSVDISTLRDPQAD-SDRVQK-PEWLV 167


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 310 PRDWPISSNVSCAWPLYFYYTCL 242
           PR WPI   V+C   + +Y++ L
Sbjct: 686 PRQWPIQMFVACCGYVVYYFSSL 708


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -2

Query: 448 GPFRSLFKTNTASTVLDSGILDVIYDPQDLRVRPSGLDQLKRLRGVPRDWPISSNVSC 275
           G  R++ K      +  S ILD+IY  + +++  S  +QL +     R   ISSN  C
Sbjct: 244 GTARAMIKQ--LENIRPSSILDIIYSGESMQLASSVQEQLPQQTTCERCGFISSNRIC 299


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 310 PRDWPISSNVSCAWPLYFYYT 248
           P  WP+S  +SCA  +  Y+T
Sbjct: 619 PSQWPVSIFISCAGYVVNYFT 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,968
Number of Sequences: 5004
Number of extensions: 68943
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)