Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1773
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0355 - 24359265-24359888 31 1.3
02_02_0076 + 6581428-6581695,6582247-6582305,6582481-6582531,658... 31 1.3
01_06_1327 + 36337578-36337976,36338068-36338397,36338523-363386... 31 1.3
01_06_1424 - 37269397-37270299 29 3.1
12_02_0441 + 19115990-19116478 29 5.4
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858... 29 5.4
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 29 5.4
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 7.2
02_03_0175 + 15999507-15999839,16000126-16000407,16000736-16000831 28 7.2
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 28 7.2
11_06_0708 + 26475306-26478404 28 9.5
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166 28 9.5
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 28 9.5
07_03_0428 + 18095593-18095880,18095994-18096104,18096207-180962... 28 9.5
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 28 9.5
01_02_0090 + 11012325-11012463,11012543-11012797,11013001-110130... 28 9.5
>05_05_0355 - 24359265-24359888
Length = 207
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 628 GRGIPSDQSGGEGPGPKATQGRGEG 554
G G+PS +S EGP P T G +G
Sbjct: 81 GHGVPSTKSFNEGPAPSTTGGGDDG 105
>02_02_0076 +
6581428-6581695,6582247-6582305,6582481-6582531,
6582766-6582898,6583533-6583618,6583955-6584008,
6584576-6584645,6585198-6585259,6585370-6585457,
6585645-6585728,6585820-6586028
Length = 387
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 561 VKEVLDQTKIKFPKPRCVAANTRRKGEDSKIHDISTERDPSAACSRRIQ--QAPSWTV 394
V++++ + + PKPR + NT R DS I +++ A+C + P W V
Sbjct: 161 VEDLVSKKRTVKPKPRFLRVNTLRTSTDSVIEELNKIHKGKASCMVAVALCPEPGWKV 218
>01_06_1327 +
36337578-36337976,36338068-36338397,36338523-36338628,
36338722-36339104
Length = 405
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 607 QSGGEG-PGPKATQGR-GEGSPGPDEDKISEAEVCG 506
Q+G +G PG + R G+P PDED SE CG
Sbjct: 48 QAGEDGRPGKRQRLARTASGAPRPDEDSASERPSCG 83
>01_06_1424 - 37269397-37270299
Length = 300
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 628 GRGIPSDQSGGEGPGPKATQGRGEGSPGPDEDKIS 524
GR +P +SG G G + RG+G P K+S
Sbjct: 138 GRILPDKRSGSRGGGGGGSSRRGDGEEEPRSPKVS 172
>12_02_0441 + 19115990-19116478
Length = 162
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 622 GIPSDQSGGEGPGPKATQGRGEGSPGPDEDKISEAE 515
G+ + GG G G K +G+G+G G DE++ E E
Sbjct: 121 GLEKNGRGGGGGGRKK-KGKGKGGGGEDEEEEEEEE 155
>10_08_0548 -
18685114-18685230,18685615-18685724,18685779-18685802,
18686135-18686213,18686346-18686588,18686659-18686823,
18686960-18687037,18687185-18687231,18687319-18687379,
18687667-18687723,18688164-18688247,18689292-18689357,
18689447-18689574,18689693-18689885
Length = 483
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 392 STVQDGACCIRLEQAAEGSRSVLMSCIFESSPFLL 496
+T AC L+Q+ GS S S +FES P +
Sbjct: 395 ATCAQNACVFLLKQSLNGSNSSTASSVFESLPLAI 429
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 628 GRGIPSDQSGGEGPGPKATQGRGEGSPGPDED 533
G G + + G G P AT R GSP PD+D
Sbjct: 30 GIGGGAGRGRGRGLPPSATPPRAPGSPVPDDD 61
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 631 VGRGIPSDQSGGEGPGPKATQGRGEGSP 548
VG SG G G ++QG GEGSP
Sbjct: 888 VGSASTPPSSGDGGAGQASSQGAGEGSP 915
>02_03_0175 + 15999507-15999839,16000126-16000407,16000736-16000831
Length = 236
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -2
Query: 604 SGGEGPGPKATQGRGEGSPGPDEDKISEAEVCGGQH 497
+GG G G G G G D D++ V G +H
Sbjct: 128 AGGCGEGVAVAGGNGSGGAVQDNDRVERQAVAGHRH 163
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 277 CAWPLYFYYTCLMRIYRSTPKSSGPKI 197
C YFY+ C+ IYRST K + P +
Sbjct: 288 CLSSRYFYH-CIQDIYRSTKKHTNPPV 313
>11_06_0708 + 26475306-26478404
Length = 1032
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 561 VKEVLDQTKIKFPKPRCVAANTRRKG-EDSKIHD-ISTERD 445
VKE L + + K + RC ++ R+G EDS IH+ IS +D
Sbjct: 30 VKEDLRELQEKMEQIRCFISDVERRGMEDSSIHNWISRLKD 70
>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
Length = 940
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 561 VKEVLDQTKIKFPKPRCVAANTRRKG-EDSKIHD-ISTERD 445
VKE L + + K + RC ++ R+G EDS IH+ IS +D
Sbjct: 30 VKEDLRELQEKMEQIRCFISDVERRGMEDSSIHNWISRLKD 70
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 634 VVGRGIPSDQSGGEGPGPKATQGRGEGSPGPDEDKISEAEVCG 506
V GI SD S G+GP P G S +K+ A +CG
Sbjct: 577 VNSEGICSD-SRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCG 618
>07_03_0428 +
18095593-18095880,18095994-18096104,18096207-18096263,
18096349-18096411,18096536-18096598,18096835-18096885
Length = 210
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -3
Query: 561 VKEVLDQTKIKFPKPRCVAANTRRKGEDSKIHDISTERDPSAACSRRIQQAPSWTVESW 385
+ EV++ ++ PK +RK + ++ +T +P + IQQ P W + W
Sbjct: 150 IVEVVEGGELLSPKTDVEKELLKRKPKTWRLACQATVGNPDSTGQMVIQQLPEWKIHEW 208
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 374 INYVQDSTVQDGACCIRLEQAAEGSRSVLMSCI 472
+++V+ + G C I+LE+AAE SVL+ I
Sbjct: 455 VDFVRKAVRAIGRCAIKLERAAERCISVLLELI 487
>01_02_0090 +
11012325-11012463,11012543-11012797,11013001-11013081,
11013164-11013234,11013400-11013432,11015658-11016047
Length = 322
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 546 DQTKIKFPKPR-CVAANTRRKGEDSKIH 466
D+T P+P+ CVAA +RRK + + IH
Sbjct: 127 DETFCGLPRPQPCVAAESRRKRKAAMIH 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,705,027
Number of Sequences: 37544
Number of extensions: 525807
Number of successful extensions: 1811
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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