Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1773
         (770 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009743-1|AAH09743.1|  531|Homo sapiens coiled-coil domain cont...    31   3.5  
BC002787-1|AAH02787.1|  531|Homo sapiens coiled-coil domain cont...    31   3.5  
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i...    31   3.5  
AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3...    31   6.0  

>BC009743-1|AAH09743.1|  531|Homo sapiens coiled-coil domain
           containing 9 protein.
          Length = 531

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -2

Query: 643 RAXVVGRGIPSDQSGGEGPGPKATQGRGEGSP---GPDEDKISEAEVCGGQH*EKRRR 479
           RA     G P +Q  G G G +  +GRG GSP   G  +  IS+ +    +  E+RRR
Sbjct: 107 RASRSWEGSPGEQPRGGGAGGRGRRGRGRGSPHLSGAGDTSISDRK---SKEWEERRR 161


>BC002787-1|AAH02787.1|  531|Homo sapiens coiled-coil domain
           containing 9 protein.
          Length = 531

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -2

Query: 643 RAXVVGRGIPSDQSGGEGPGPKATQGRGEGSP---GPDEDKISEAEVCGGQH*EKRRR 479
           RA     G P +Q  G G G +  +GRG GSP   G  +  IS+ +    +  E+RRR
Sbjct: 107 RASRSWEGSPGEQPRGGGAGGRGRRGRGRGSPHLSGAGDTSISDRK---SKEWEERRR 161


>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
           interacting protein splice variant a protein.
          Length = 2161

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 622 GIPSDQS-GGEGPGPKATQGRGEGSPG 545
           G  SD S  G G GP+ T+G+G G+PG
Sbjct: 23  GSESDSSPDGPGRGPRGTRGQGSGAPG 49


>AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3
            chain protein.
          Length = 1745

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -2

Query: 628  GRGIPSDQSGGEGP-GPKATQG-RGE-GSPGP 542
            G G+P  QSG EGP GP   +G RGE G PGP
Sbjct: 1020 GIGLPG-QSGSEGPVGPAGKKGSRGERGPPGP 1050


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,996,500
Number of Sequences: 237096
Number of extensions: 2774577
Number of successful extensions: 8291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8254
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)