Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1773
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protei...    30   2.1  
Z72508-4|CAA96637.2|  216|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68338-4|CAE48509.1|  104|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z68338-3|CAA92760.2|  105|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protein
           164 protein.
          Length = 396

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 628 GRGIPSDQSGGEGPGPKATQGRGEGSPG 545
           G G P   + GEGP   AT+G G  + G
Sbjct: 339 GAGAPVSDASGEGPADSATEGEGAPAGG 366


>Z72508-4|CAA96637.2|  216|Caenorhabditis elegans Hypothetical
           protein F28H7.4 protein.
          Length = 216

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 678 K*PGLFISGGTYGPPWWEGASHLINQVVK 592
           K PGL I GG + P +W+G    I  V K
Sbjct: 96  KYPGLVIEGGNFSPDFWKGCLAQIVGVAK 124


>Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.6 protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 622 GIPSDQSGGEGPGPKATQG-RGE-GSPG 545
           G P   + GEGPGP   QG  G+ G+PG
Sbjct: 152 GAPGQDAVGEGPGPAGPQGPAGDAGAPG 179


>Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical
           protein K08C9.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 622 GIPSDQSGGEGPGPKATQGRGEGSPGPD 539
           G P  + G  GP   A +  GEG+PGPD
Sbjct: 241 GAPG-KDGETGPDGAAGEAGGEGAPGPD 267


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -2

Query: 622 GIPSDQSGGEGPGPKATQGRGEGSPGPDEDKIS----EAEVC 509
           G P D     GPGP+  QG  +G PG  E K+     +AE C
Sbjct: 284 GPPGDAGPDGGPGPQGEQG-ADGGPG-SEGKVGRPGRDAEYC 323


>Z68338-4|CAE48509.1|  104|Caenorhabditis elegans Hypothetical
           protein T24B8.3b protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 613 SDQSGGEGPGPKATQGRGEGSPGPDEDKISEAEVCGGQ 500
           +D+   EG G  +  G GE   G DED   EAE  GG+
Sbjct: 67  NDEDSSEGEGEGSDAGEGEEGSGDDEDG-EEAE--GGE 101


>Z68338-3|CAA92760.2|  105|Caenorhabditis elegans Hypothetical
           protein T24B8.3a protein.
          Length = 105

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 613 SDQSGGEGPGPKATQGRGEGSPGPDEDKISEAEVCGGQ 500
           +D+   EG G  +  G GE   G DED   EAE  GG+
Sbjct: 68  NDEDSSEGEGEGSDAGEGEEGSGDDEDG-EEAE--GGE 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,615,473
Number of Sequences: 27780
Number of extensions: 404924
Number of successful extensions: 1410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)