Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1772
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          47   7e-07
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    27   0.43 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    26   1.3  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         25   2.3  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         25   2.3  
AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    25   3.0  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 46.8 bits (106), Expect = 7e-07
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = +2

Query: 353  TALWCASGAGHLAIVKRLVKAGADVNHATRTVSTPLRAACFEGRLDIVK-YLVRHGADIH 529
            T L  A       IVK L+ AGA +++     +TPL  A  E   D+V+  L++ G  + 
Sbjct: 786  TGLHLAVSCNSEPIVKALLGAGAKLHYCDYRGNTPLHRAVVENVPDMVRLLLLQGGLRLD 845

Query: 530  KANKYNNTCLMIAAYKGYLDVVQFLLDSGARVDDRAL-CGATALHFAAE 673
              N    T L  A Y   L + + LL++GA V ++ L  G   LH A +
Sbjct: 846  CTNDDGLTALQAAVYARNLKITRILLEAGASVREKDLKHGNNILHIAVD 894



 Score = 29.5 bits (63), Expect = 0.11
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 311  EGTVKFDEYVIEGATALWCASGAGHLAIVKRLVKAGADVNHA-TRTVSTPLRAACFEGRL 487
            +G ++ D    +G TAL  A  A +L I + L++AGA V     +  +  L  A     L
Sbjct: 839  QGGLRLDCTNDDGLTALQAAVYARNLKITRILLEAGASVREKDLKHGNNILHIAVDNDAL 898

Query: 488  DIVKYLV 508
            DIV Y++
Sbjct: 899  DIVHYIL 905


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +2

Query: 356 ALWCASGAGHLAIVKRLVKA-GADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGA---- 520
           AL+ A   GHL   + ++++   DVN       TPL  A       + K L++ GA    
Sbjct: 430 ALFSAVEHGHLEKARTILESTDVDVNSLNSDGLTPLDVAVLSNNRSMTKMLLQQGAIENA 489

Query: 521 -DIHKAN 538
             +H AN
Sbjct: 490 HSVHAAN 496


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 466 GLLRRTPGHSQVSGQTRRRHTQ--GEQIQQHL 555
           GL ++ P + QVS    +RHTQ   EQ+Q+ L
Sbjct: 694 GLQQKPPRYLQVSMDELKRHTQQRREQLQREL 725


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
 Frame = -2

Query: 381 PAPEAHHSAVAPSITYSSNLTVPSVSKQTGGL-NFSNKILTAPSRPCLAAVMRGVHLTPS 205
           P+P  +    +PS   S+  T  + S  TG + ++S K      R  L          P 
Sbjct: 269 PSPATYGDIASPSSASSAMTTPATTSSPTGSVYDYSRKASALDHRAALLNGFSAAASYPK 328

Query: 204 LHTSL 190
           LH  +
Sbjct: 329 LHEEI 333


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
 Frame = -2

Query: 381 PAPEAHHSAVAPSITYSSNLTVPSVSKQTGGL-NFSNKILTAPSRPCLAAVMRGVHLTPS 205
           P+P  +    +PS   S+  T  + S  TG + ++S K      R  L          P 
Sbjct: 269 PSPATYGDIASPSSASSAMTTPATTSSPTGSVYDYSRKASALDHRAALLNGFSAAASYPK 328

Query: 204 LHTSL 190
           LH  +
Sbjct: 329 LHEEI 333


>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 366 HHSAVAPSITYSSNLTVPSVSKQTGGLNFSNKILT 262
           H + VAPS       +    +  TG  NF+NK LT
Sbjct: 32  HTTVVAPSAVSPHQSSFMINNNSTGRTNFTNKQLT 66


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,345
Number of Sequences: 2352
Number of extensions: 15480
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)