Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1772
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    24   1.2  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    24   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.5  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 505 GQTRRRHTQGEQIQQHLPDDRCLQRLFGC 591
           GQ+ R     EQ+   L D R L+R   C
Sbjct: 26  GQSGRSRVSDEQLNMALSDQRYLRRQLKC 54


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 505 GQTRRRHTQGEQIQQHLPDDRCLQRLFGC 591
           GQ+ R     EQ+   L D R L+R   C
Sbjct: 26  GQSGRSRVSDEQLNMALSDQRYLRRQLKC 54


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 480 PSKQAARRGVLTVLVAWLTSA 418
           PSK + RR  + + + W+ S+
Sbjct: 155 PSKMSRRRAAVLIAIVWICSS 175


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 352 RSLDYIFIKLNCPFSF*TDRWSELLQ 275
           +++   F++   P+S  TD W ELL+
Sbjct: 138 KNIHVSFLRTVPPYSHQTDVWVELLK 163


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 475 RRTPGHSQVSGQTRRRHT 528
           R+TP   + SG+ RRR T
Sbjct: 397 RQTPPSRKESGRRRRRRT 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,205
Number of Sequences: 438
Number of extensions: 4033
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)