Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1771
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    30   0.31 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.31 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   5.0  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   6.6  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   8.7  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    25   8.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   8.7  
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    25   8.7  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   8.7  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   8.7  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 191 LACKSHRGPRLQAASFDQA-PTAAANATR-PKVHHPNSSAPPFCKQLINYHFTLTVT 27
           L  KS   P+     FD A PT     TR  KV      +   CKQL+ Y FT  VT
Sbjct: 503 LRYKSLPAPKTFRRFFDFAIPTTELKPTRISKVCRNGLLSTDLCKQLVEYSFTTAVT 559


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +2

Query: 80  RRNWDGVPLGESHS----PPQSVPGRRTPLGAVGLGGFYMQGGQPPPPQHCYPTDENQPE 247
           RRN    P+G   S    PP   P R    G++ L         PPPP+   P+   QP 
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA-PSTGRQPP 377

Query: 248 PGTS 259
           P +S
Sbjct: 378 PLSS 381


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +2

Query: 122 PPQSVPGRRTPLGAVGLGGFYMQGGQPPPPQHCYPTDENQPEPGTSYGQRPVNESKS 292
           PPQS    + P+ +  +     Q   PPPP     T    P P T+   R    S S
Sbjct: 247 PPQSTNTSQLPMPSRNVNNLGSQVNIPPPP----ATPSQPPRPPTNASTRSTGTSSS 299


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 200 PPPPQHCYPTDENQPEPGTSYG 265
           PPPP + +  D N+P P  + G
Sbjct: 311 PPPPSNDFWKDSNEPAPADNKG 332


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 555 PHRVSI*P-VFQRQPSSFSLQPRAPRRPQN 641
           PH  S  P    R+P SFSL  +AP +  N
Sbjct: 416 PHPTSTMPEALPREPLSFSLPEKAPEKATN 445


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 200 PPPPQHCYPTDENQPEPGTSYGQ 268
           PPPPQ  YP   +   P   Y Q
Sbjct: 208 PPPPQQNYPPAASSSAPPMQYQQ 230


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/68 (23%), Positives = 28/68 (41%)
 Frame = +2

Query: 314 KTVRLNINARERRRMHDLNDALDELRGVIPYAHSPSVRKLSKIATLLLAKNYIMMQASAL 493
           K  RL+    ERRR   +++ + EL  ++P         L + A  + +   +       
Sbjct: 87  KAKRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREK 146

Query: 494 EELRRLVA 517
             L +LVA
Sbjct: 147 SNLEKLVA 154


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 200 PPPPQHCYPTDENQPEPGTSYGQRPVNESKSKHKMRQGK 316
           PPPP H  P  E+ P P   + +   +E    H+  + K
Sbjct: 325 PPPPMHHEP-GEHMPPPPFKHHELEEHEGPEHHRGPEDK 362


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 278 NESKSKHKMRQGKTVRLNINARERRRMHDLNDALDELRGVIPYAHSPSV 424
           NE+K K    QGKTV+L        + H ++   +E   + P A+  ++
Sbjct: 112 NEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYDTTI 160


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 585 QRQPSSFSLQPRAPRRPQNHPLEIHS*NLNRKP 683
           Q+QP++  LQP  P   Q +P+ I +   +R P
Sbjct: 534 QQQPTTIPLQPNIPVLNQQYPVMIPAMEDSRGP 566


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 403 WYHTSEFVQGVI*IVHTSSF-TGVYVQAHS 317
           W H  +FV  VI I   SS  +G+Y+ + S
Sbjct: 312 WNHAGDFVNAVILITCLSSINSGIYIGSRS 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,652
Number of Sequences: 5004
Number of extensions: 59361
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)