Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1771
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      43   4e-06
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   7.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.1  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 33/73 (45%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
 Frame = +2

Query: 278 NESKSKHKMRQ--GKTV------RLNINARERRRMHDLNDALDELRGVIPYAHSPSVRKL 433
           N S +K KMR+  G T       R+  N RER+R   LN+A   LR +IP   S    KL
Sbjct: 232 NASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD---KL 288

Query: 434 SKIATLLLAKNYI 472
           SKI TL LA  YI
Sbjct: 289 SKIQTLKLATRYI 301


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 68  CKQLINYHFTLT 33
           C Q INYHF +T
Sbjct: 222 CDQRINYHFGMT 233


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 62  VYKMEGRRNWDGVPLGE 112
           V   EG + WDGV +G+
Sbjct: 412 VKSSEGIQTWDGVLMGQ 428


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -3

Query: 262 IAGSWFWLVLVRRITMLWGRRLSSLHVKA 176
           + G WF  + +R   ++W R    + + A
Sbjct: 420 VVGKWFNSLDIRTEELIWARGTKDIPISA 448


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -3

Query: 262 IAGSWFWLVLVRRITMLWGRRLSSLHVKA 176
           + G WF  + +R   ++W R    + + A
Sbjct: 510 VVGKWFNSLDIRTEELIWARGTKDIPISA 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,818
Number of Sequences: 438
Number of extensions: 4666
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)