Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1770
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    61   6e-11
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    61   8e-11
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   0.87 
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   4.7  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   6.1  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    25   6.1  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 61.3 bits (142), Expect = 6e-11
 Identities = 31/66 (46%), Positives = 43/66 (65%)
 Frame = +3

Query: 138 ITXHSKFVRDLVXEVXGHAQYXKRAMELLKVSKDKRALKFLKRXLGTHIRAXRKREELSN 317
           ++  + FVR +V EV G A Y +R MEL++ S+DKRA K  K+ LGT  RA  K EEL++
Sbjct: 31  LSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTS 90

Query: 318 VLAQMR 335
           V+   R
Sbjct: 91  VIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 60.9 bits (141), Expect = 8e-11
 Identities = 31/66 (46%), Positives = 43/66 (65%)
 Frame = +3

Query: 138 ITXHSKFVRDLVXEVXGHAQYXKRAMELLKVSKDKRALKFLKRXLGTHIRAXRKREELSN 317
           ++  + FVR +V EV G A Y +R MEL++ S+DKRA K  K+ LGT  RA  K EEL++
Sbjct: 31  LSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTS 90

Query: 318 VLAQMR 335
           V+   R
Sbjct: 91  VIQSSR 96


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 298 SVKNLATCSLR*GRQPPRLITITI 369
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 362 MVMSLGGCLPHLSEHVAKFFTLPXGADVCAQXSLQELQSTLV 237
           +V SL G    L +  A+FFT P  ++VCA   +   +  ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 241 LSFDTLSNSIALXSY*ACPXTS 176
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 128 LVXXGLIPDGFVCDTLAASGY 66
           L+  G+   GFVCD+LA  G+
Sbjct: 42  LIFPGVGNFGFVCDSLAKQGF 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,337
Number of Sequences: 5004
Number of extensions: 13293
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)