Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1770
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     79   1e-15
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    78   2e-15

>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 40/65 (61%), Positives = 46/65 (70%)
 Frame = +3

Query: 141 TXHSKFVRDLVXEVXGHAQYXKRAMELLKVSKDKRALKFLKRXLGTHIRAXRKREELSNV 320
           T    FVR+L+ EV G A Y KR  ELLKV KDKRALK  KR LGTH RA +KREE++ V
Sbjct: 37  TKRVTFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGV 96

Query: 321 LAQMR 335
           L +MR
Sbjct: 97  LRKMR 101


>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 39/65 (60%), Positives = 45/65 (69%)
 Frame = +3

Query: 141 TXHSKFVRDLVXEVXGHAQYXKRAMELLKVSKDKRALKFLKRXLGTHIRAXRKREELSNV 320
           T    FVR L+ EV G A Y KR  ELLKV KDKRALK  KR LGTH RA +KREE++ V
Sbjct: 37  TKRVNFVRGLIREVVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGV 96

Query: 321 LAQMR 335
           + +MR
Sbjct: 97  IRKMR 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,323,383
Number of Sequences: 37544
Number of extensions: 97065
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)