Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1770
         (414 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.               107   1e-23
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...   107   1e-23
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...   107   1e-23
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...   107   1e-23
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...   107   1e-23
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    59   7e-09

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score =  107 bits (257), Expect = 1e-23
 Identities = 61/110 (55%), Positives = 72/110 (65%)
 Frame = +3

Query: 9   MAPXFXIAXXLXKGHKXTXISAGRXGITDKAIRN*AXXH*RVFITXHSKFVRDLVXEVXG 188
           MA  + +A  L KGHK T           K +        R  +T H+KFVRD++ EV G
Sbjct: 1   MALRYPMAVGLNKGHKVT-----------KNVSKPRHSRRRGRLTKHTKFVRDMIREVCG 49

Query: 189 HAQYXKRAMELLKVSKDKRALKFLKRXLGTHIRAXRKREELSNVLAQMRK 338
            A Y +RAMELLKVSKDKRALKF+K+ +GTHIRA RKREELSNVLA MRK
Sbjct: 50  FAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  107 bits (257), Expect = 1e-23
 Identities = 61/110 (55%), Positives = 72/110 (65%)
 Frame = +3

Query: 9   MAPXFXIAXXLXKGHKXTXISAGRXGITDKAIRN*AXXH*RVFITXHSKFVRDLVXEVXG 188
           MA  + +A  L KGHK T           K +        R  +T H+KFVRD++ EV G
Sbjct: 1   MALRYPMAVGLNKGHKVT-----------KNVSKPRHSRRRGRLTKHTKFVRDMIREVCG 49

Query: 189 HAQYXKRAMELLKVSKDKRALKFLKRXLGTHIRAXRKREELSNVLAQMRK 338
            A Y +RAMELLKVSKDKRALKF+K+ +GTHIRA RKREELSNVLA MRK
Sbjct: 50  FAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  107 bits (257), Expect = 1e-23
 Identities = 61/110 (55%), Positives = 72/110 (65%)
 Frame = +3

Query: 9   MAPXFXIAXXLXKGHKXTXISAGRXGITDKAIRN*AXXH*RVFITXHSKFVRDLVXEVXG 188
           MA  + +A  L KGHK T           K +        R  +T H+KFVRD++ EV G
Sbjct: 1   MALRYPMAVGLNKGHKVT-----------KNVSKPRHSRRRGRLTKHTKFVRDMIREVCG 49

Query: 189 HAQYXKRAMELLKVSKDKRALKFLKRXLGTHIRAXRKREELSNVLAQMRK 338
            A Y +RAMELLKVSKDKRALKF+K+ +GTHIRA RKREELSNVLA MRK
Sbjct: 50  FAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  107 bits (257), Expect = 1e-23
 Identities = 61/110 (55%), Positives = 72/110 (65%)
 Frame = +3

Query: 9   MAPXFXIAXXLXKGHKXTXISAGRXGITDKAIRN*AXXH*RVFITXHSKFVRDLVXEVXG 188
           MA  + +A  L KGHK T           K +        R  +T H+KFVRD++ EV G
Sbjct: 1   MALRYPMAVGLNKGHKVT-----------KNVSKPRHSRRRGRLTKHTKFVRDMIREVCG 49

Query: 189 HAQYXKRAMELLKVSKDKRALKFLKRXLGTHIRAXRKREELSNVLAQMRK 338
            A Y +RAMELLKVSKDKRALKF+K+ +GTHIRA RKREELSNVLA MRK
Sbjct: 50  FAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  107 bits (257), Expect = 1e-23
 Identities = 61/110 (55%), Positives = 72/110 (65%)
 Frame = +3

Query: 9   MAPXFXIAXXLXKGHKXTXISAGRXGITDKAIRN*AXXH*RVFITXHSKFVRDLVXEVXG 188
           MA  + +A  L KGHK T           K +        R  +T H+KFVRD++ EV G
Sbjct: 1   MALRYPMAVGLNKGHKVT-----------KNVSKPRHSRRRGRLTKHTKFVRDMIREVCG 49

Query: 189 HAQYXKRAMELLKVSKDKRALKFLKRXLGTHIRAXRKREELSNVLAQMRK 338
            A Y +RAMELLKVSKDKRALKF+K+ +GTHIRA RKREELSNVLA MRK
Sbjct: 50  FAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 58.8 bits (136), Expect = 7e-09
 Identities = 27/32 (84%), Positives = 30/32 (93%)
 Frame = +3

Query: 222 LKVSKDKRALKFLKRXLGTHIRAXRKREELSN 317
           LKVSKDKRALKF+K+ +GTHIRA RKREELSN
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,298,862
Number of Sequences: 237096
Number of extensions: 545717
Number of successful extensions: 937
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)