Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1768
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    30   0.44 
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo...    26   7.2  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    26   7.2  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   7.2  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   7.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   7.2  

>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +3

Query: 3   NVILIIG*KMFQNTIRHINVLSKRKLPIMSFTRTKAAYEGEGKTTVRVLN--NEYDLGLM 176
           NV++ +G   FQ T++ ++ + +  LPI+ F      Y  E +      N    +D   +
Sbjct: 443 NVVVFVGDGSFQETVQEVSQMVRLNLPIIMFLINNRGYTIEVEIHDGPYNRIKNWDYAAI 502

Query: 177 IDSF-----ATYGFKLNNG 218
           +++F        GF++ NG
Sbjct: 503 VEAFNAGEGHAKGFRVGNG 521


>SPAC12G12.05c |taf9||transcription initiation factor
           Taf9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 199 P*VAKESIISPRSYSLFRTLTVVLPSPSYAALVRVKLIIGSFLFDKTLI 53
           P ++ ESI  P+   L   +   L  PSY+  V ++L+  +  + + LI
Sbjct: 4   PGISDESIKGPKDVRLIHLILSSLGVPSYSQTVPLQLLTFAHRYTQQLI 52


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
 Frame = +3

Query: 96  TRTKAAYEGEGK----TTVRVLNNEYDLGLMIDSFATYGFKLNNGITVLGPMAIFPRTVL 263
           T ++   EG G       V  L  ++++   I  ++ +     NG+     + I      
Sbjct: 494 TPSRVVIEGVGNGPLSALVDALRRQFNISFDIGQYSEHAIGSGNGVKAASYVEIIFNNTS 553

Query: 264 SWQVADSDDVTEESLK 311
            W V    DVT   LK
Sbjct: 554 FWGVGIDADVTSAGLK 569


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 489 RICPLRSGS*MWNMRVLLPRF 427
           R+ PLRSGS  WN+  L+ +F
Sbjct: 427 RMSPLRSGSKTWNIFQLVEQF 447


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 60  VLSKRKLPIMSFTRTKAAYEGEGKTTVRVLNNEYDLGL 173
           V SK ++    +TR K   E +GK  V  L  E DL +
Sbjct: 499 VKSKTEILTQLYTRKKQLLEQQGKGNVACLPKESDLSM 536


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 521 DFERWYQGSSHGSALC 474
           DFE+WY   ++GS +C
Sbjct: 572 DFEKWYTRYANGSPIC 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,372
Number of Sequences: 5004
Number of extensions: 59487
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)