Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1767
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103 31 0.88
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339... 29 3.5
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 29 4.7
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 29 4.7
02_01_0733 - 5477110-5477421,5478146-5478166 28 6.2
01_06_0881 + 32692345-32692497,32693167-32693286,32693382-326934... 28 6.2
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377... 28 8.2
04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587 28 8.2
>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
Length = 196
Score = 31.1 bits (67), Expect = 0.88
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 362 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 460
CGD+ C G+FC G D S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190
>02_04_0207 +
20933319-20933427,20933503-20933701,20933785-20933931,
20934683-20934764,20935542-20935697,20935948-20936121,
20936278-20936349,20937012-20937083,20937322-20937440,
20937540-20937625,20937747-20937799,20938076-20938153
Length = 448
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 521 EDGTVIPGDLPARDVPQMITITFDDA 598
EDG + GD R VP ++T FDDA
Sbjct: 48 EDGQLGHGDAEDRPVPTVLTAAFDDA 73
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 290 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 463
+ +ER+ L E +G ++C ST G+K+ DG D+ D +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -1
Query: 445 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIFHSI 266
T++ + S+A +LF + F +V + I++ WF + + L+V E+TI +
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282
Query: 265 FP 260
P
Sbjct: 283 NP 284
>02_01_0733 - 5477110-5477421,5478146-5478166
Length = 110
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 260 WKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFC--NGEKDCGDGSD 433
W +K+ K + R+ L Y C D LA GD TC R L +G D DG
Sbjct: 34 WTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGD-TCFFRALRSAGSGAGDVDDGDG 92
Query: 434 EN 439
++
Sbjct: 93 DH 94
>01_06_0881 +
32692345-32692497,32693167-32693286,32693382-32693474,
32694197-32694283,32696052-32696063,32696553-32696625,
32697073-32697182,32697608-32697658,32698154-32698242,
32698518-32698599,32698680-32698793,32699015-32699094,
32699749-32699884,32700210-32700280,32700363-32700457,
32700467-32700597,32701009-32701398
Length = 628
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 368 DSTCIERGLFCNGE-KDCGDGSD--ENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVI 538
D C+ G FCNG GD S+ +N+ + D +R P S +L G V
Sbjct: 444 DEHCLYAGAFCNGHGYGTGDSSNKHQNANSVPFDDSRTPSDQSLSNILSTTRGYIKG-VC 502
Query: 539 PGDLPARDVPQMITITFDDAINNNN 613
PG A+ + + D++I N+
Sbjct: 503 PGLTHAQKLGISYSAEEDNSIQQNS 527
>12_02_0405 -
18635503-18635871,18636703-18636817,18636970-18637721,
18638540-18638542
Length = 412
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +2
Query: 260 WKDAVKNCKLKNKERKIKPLLYTEEPLCQ--DGFL---ACGDSTCIERGLFCNGEKDCGD 424
W+D V + + + R+ KPL++ ++ + FL GD LF E+D D
Sbjct: 59 WRDVVDEVEPEVQRRRAKPLVFFKDGRYEPASAFLLHDVAGDCDVTSLSLFREEEED-DD 117
Query: 425 GSDENSCDIDNDPNRAPPCDSSQCV 499
G D + N+ + C+ C+
Sbjct: 118 GGDRDFFARYNNDDMVGSCNGLICL 142
>04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587
Length = 230
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 51 DGGDKLTRRQRKMKAWNKNY-ARTRTPANGSGW---WPARATTVATSSSVLP 194
D G T+R RK +AW ++ A P G W + + + ++ S+ LP
Sbjct: 60 DDGSYRTKRSRKYEAWRVDFDAGILVPVKGFNWRALFISMSRAISVSAETLP 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,752,012
Number of Sequences: 37544
Number of extensions: 452270
Number of successful extensions: 1545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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