Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1765
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.6  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   2.8  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   3.7  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   3.7  
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    25   6.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   6.4  
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    25   6.4  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.4  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 216 LPIRNFSQIYFIVIN*TSMGNITPTHFQEGTVILFVGAI 332
           LPI+  S + F++I+ T +G    T FQ    +  +GA+
Sbjct: 342 LPIKPLSSLLFVLISFTCIGLYVRTAFQNPGYVDKIGAV 380


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 237 VKSSLLVDKNPKKYSCDLKKSHKRKSV 157
           ++   L  +  K+   DL+KSHKRKSV
Sbjct: 138 IEEGELTSEEEKEPIQDLRKSHKRKSV 164


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 152 LKTDLRLWDFLRSQEYFFGFLSTNKELFTNLFHSNKLDID 271
           L+  +R+WD   S +    F S+  ++   +F   K D+D
Sbjct: 198 LQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLD 237


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 176 DFLRSQEYFFGFLSTNKELFTNLFHSN 256
           +FLR  E +    S NKEL +NL  S+
Sbjct: 681 EFLRKMEVYNNQFSKNKELCSNLLSSS 707


>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 316 YLLALLEPDLPFP*PQQRSGL 378
           Y+  LL P L FP P +R+G+
Sbjct: 138 YVKQLLNPHLKFPLPHRRTGV 158


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 376 APIVVEAKEKADPVPIAPTNKITVPSWKCVGVILPID 266
           AP  V ++  A P P APT + T P+ +      P+D
Sbjct: 345 APTTVSSERNAPPYPSAPT-RPTPPTVQTSSSAAPVD 380


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 316 YLLALLEPDLPFP*PQQRSGL 378
           Y+  LL P L FP P +R+G+
Sbjct: 138 YVKQLLNPHLKFPLPHRRTGV 158


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 218 TNKELFTNLFHSNKLDIDG 274
           TN+E+ T     NKLD+DG
Sbjct: 14  TNEEILTLTDQFNKLDVDG 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,472
Number of Sequences: 5004
Number of extensions: 39577
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)