Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1765
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0944 - 29557360-29557485,29557570-29557698,29557875-295579...    29   2.8  
05_01_0347 - 2717275-2717613,2717994-2718077,2718185-2718247,271...    28   3.7  
07_01_0017 - 114497-114547,114700-114816,114917-114997,115312-11...    27   6.4  
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834...    27   6.4  
01_06_1391 + 36992276-36992476,36992609-36992794,36993215-369933...    27   6.4  

>04_04_0944 -
           29557360-29557485,29557570-29557698,29557875-29557917,
           29558321-29558400,29558493-29558804
          Length = 229

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 271 WVISLLRTSRRGQLFYLLALLEPDLPFP 354
           W+ + L + +R  LFY  A L P L FP
Sbjct: 106 WIFAWLDSGKRRYLFYAAAYLAPYLSFP 133


>05_01_0347 -
           2717275-2717613,2717994-2718077,2718185-2718247,
           2718350-2718488,2719118-2719219,2719324-2719424,
           2719915-2719981,2720074-2720120,2720246-2720440,
           2720523-2720569,2721242-2721339,2722219-2722337,
           2722438-2722611
          Length = 524

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 306 TVILFVGAIGTGSAFSLASTTIGALF 383
           T+ILF GA+GT  +F + S  IGA+F
Sbjct: 112 TIILF-GAVGTLISFVIISLAIGAIF 136


>07_01_0017 -
           114497-114547,114700-114816,114917-114997,115312-115371,
           116029-116238,116412-116720,116790-117080
          Length = 372

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 285 PTHFQEGTVILFVGAIGTGSAFSLASTTIGALFYQYY*FRQH 410
           P H   G ++L V AIG   AF  +   IG L  +   F  H
Sbjct: 243 PLHVLHGIIVLCVSAIGCPDAFIHSVQEIGPLKIERLDFSDH 284


>05_05_0039 -
           21782093-21782320,21782383-21782754,21783031-21783496,
           21784896-21784993,21785179-21785362,21785462-21785574,
           21785942-21786127,21786191-21786364
          Length = 606

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 36  VWFYW*NLTVNSIASLLLI*PY-FSQFSLMS 125
           VW  W +   N +A +LL  PY FSQ  ++S
Sbjct: 47  VWDAWFSCASNQVAQVLLTLPYSFSQLGMLS 77


>01_06_1391 +
           36992276-36992476,36992609-36992794,36993215-36993327,
           36993504-36993687,36993799-36993900
          Length = 261

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 36  VWFYW*NLTVNSIASLLLI*PY-FSQFSLMS 125
           VW  W +   N +A +LL  PY FSQ  ++S
Sbjct: 56  VWDAWFSCASNQVAQVLLTLPYSFSQLGMLS 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,689,644
Number of Sequences: 37544
Number of extensions: 214343
Number of successful extensions: 459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)