Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1765
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    27   7.6  

>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 99  YFSQFSLMSVRPKILCLR*RQICVYGTF*DRKNIFLDFYLPIRNFSQIYFIVIN*TSMGN 278
           +F   S ++  P++L  R   +    TF  RK IFL+F++P R     Y       S G+
Sbjct: 158 FFGTLSPVAKTPRLLNKRSYVVLKLFTF-QRKTIFLEFWVPPRKLLGTYIASTTQMSPGS 216

Query: 279 ITPTHF 296
               HF
Sbjct: 217 RISYHF 222


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 127 FGLKFFAFVKDRFAFMGLFKIARIFFWI 210
           F +KFF F+ +R  F+ +  +  I FW+
Sbjct: 33  FQVKFFRFIDNRSNFIAIIYVGFIHFWV 60


>Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical
           protein T23G11.6a protein.
          Length = 653

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 222 LVDKNPKKYSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMVISVI 82
           L  + P++   DL K+   K V+N+   +   +T+G I    VI ++
Sbjct: 557 LFKEEPRRDVYDLSKTDDAKGVYNQKGTYAVPITIGAIGLVTVIVIV 603


>Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical
           protein T23G11.6b protein.
          Length = 616

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 222 LVDKNPKKYSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMVISVI 82
           L  + P++   DL K+   K V+N+   +   +T+G I    VI ++
Sbjct: 557 LFKEEPRRDVYDLSKTDDAKGVYNQKGTYAVPITIGAIGLVTVIVIV 603


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
 Frame = +2

Query: 200 FFGFLSTNKELFTNLFHSNKLDIDG*Y-HSYALPGGDSYFI--------CWRYWNRICLF 352
           F  F +T   +FT LF   K ++DG + +     G  ++ I         W  W+   LF
Sbjct: 420 FLNFEATTSLIFTKLFSCKKFNVDGSFVYPLTWNGEQTWTIDYAFTKANAWFVWDHKRLF 479

Query: 353 LSLNND 370
             L ND
Sbjct: 480 TDLIND 485


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,683,854
Number of Sequences: 27780
Number of extensions: 210272
Number of successful extensions: 498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)