Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1764
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    24   5.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    23   7.3  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    23   7.3  
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    23   9.6  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    23   9.6  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 167 REEFKAQLSGPTEEVGPESSRW 232
           +EEF A    P  +VGP   +W
Sbjct: 319 KEEFDASFLQPLADVGPTLPQW 340


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 196  TGQLSFELLTSLRSYVRLKRGRHV 125
            T Q  F   TSLR +  LK  RH+
Sbjct: 1216 TAQKLFNATTSLREFAALKSLRHL 1239


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = -3

Query: 157 SYVRLKRGRHVGEL 116
           +YVR++RG++ G+L
Sbjct: 338 AYVRIRRGKYAGDL 351


>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 76  P*GSHRGHHG 105
           P GSHRGH+G
Sbjct: 129 PGGSHRGHNG 138


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +2

Query: 119 LTHVAPTLQANIRAKRR--EEFKAQLSGPTEEVGPESSRWVDPRVSSXPHARAXRPLR 286
           LT   P   +++   R   +EF + +  PT +    SS  + PR+S        +P +
Sbjct: 9   LTSHLPQSSSSLSQSREIAKEFTSNIPPPTIKTNSSSSNILKPRLSLQNEVNQLKPAK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,045,096
Number of Sequences: 5004
Number of extensions: 17622
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)