Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1764
(300 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001954-1|AAH01954.1| 683|Homo sapiens PRP3 pre-mRNA processin... 83 2e-16
BC000184-1|AAH00184.1| 683|Homo sapiens PRP3 pre-mRNA processin... 83 2e-16
AL611942-1|CAH70312.1| 683|Homo sapiens PRP3 pre-mRNA processin... 83 2e-16
AK222825-1|BAD96545.1| 683|Homo sapiens PRP3 pre-mRNA processin... 83 2e-16
AF016370-1|AAC51926.1| 683|Homo sapiens U4/U6 small nuclear rib... 83 2e-16
AF001947-1|AAC09069.1| 682|Homo sapiens U4/U6-associated RNA sp... 81 8e-16
AL133227-3|CAI40553.1| 196|Homo sapiens solute carrier family 3... 34 0.071
BC065833-1|AAH65833.1| 241|Homo sapiens F-box and leucine-rich ... 31 0.50
BC110812-1|AAI10813.1| 238|Homo sapiens complement component 1,... 29 2.0
BC064989-1|AAH64989.1| 423|Homo sapiens family with sequence si... 29 2.0
BC039689-1|AAH39689.1| 423|Homo sapiens family with sequence si... 29 2.0
AK074503-1|BAC11027.1| 423|Homo sapiens protein ( Homo sapiens ... 29 2.0
DQ363529-1|ABC88012.1| 1099|Homo sapiens low-voltage-activated c... 29 2.7
DQ363528-1|ABC88011.1| 1083|Homo sapiens low-voltage-activated c... 29 2.7
DQ363527-1|ABC88010.1| 1088|Homo sapiens low-voltage-activated c... 29 2.7
DQ363526-1|ABC88009.1| 1077|Homo sapiens low-voltage-activated c... 29 2.7
AJ420779-1|CAD12646.1| 2347|Homo sapiens calcium channel, voltag... 29 2.7
AF223563-1|AAF60163.1| 1536|Homo sapiens low-voltage-activated c... 29 2.7
AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated c... 29 2.7
AF051946-1|AAC67239.3| 2353|Homo sapiens T-type calcium channel ... 29 2.7
AE006466-3|AAK61268.1| 2373|Homo sapiens voltage dependent t-typ... 29 2.7
BC023533-1|AAH23533.2| 435|Homo sapiens PLEKHO1 protein protein. 24 2.8
Z97832-1|CAI20187.1| 993|Homo sapiens protein ( Human DNA seque... 28 4.7
BC052263-1|AAH52263.2| 992|Homo sapiens signal peptide, CUB dom... 28 4.7
AY639608-1|AAU08347.1| 993|Homo sapiens signal peptide, CUB and... 28 4.7
AK092062-1|BAC03798.1| 880|Homo sapiens protein ( Homo sapiens ... 28 4.7
AK092010-1|BAC03789.1| 581|Homo sapiens protein ( Homo sapiens ... 28 4.7
AF452494-1|AAN76808.1| 993|Homo sapiens CUB and EGF containing ... 28 4.7
AK026838-1|BAB15568.1| 149|Homo sapiens protein ( Homo sapiens ... 28 6.2
U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate rece... 27 8.2
BC051688-1|AAH51688.2| 439|Homo sapiens hypothetical protein FL... 27 8.2
BC032508-1|AAH32508.1| 439|Homo sapiens hypothetical protein FL... 27 8.2
AL834344-1|CAD39010.1| 378|Homo sapiens hypothetical protein pr... 27 8.2
AL392043-11|CAI39951.1| 222|Homo sapiens novel protein protein. 27 8.2
AB209292-1|BAD92529.1| 610|Homo sapiens N-methyl-D-aspartate re... 27 8.2
>BC001954-1|AAH01954.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 82.6 bits (195), Expect = 2e-16
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +2
Query: 56 PAPLILDREGRTVDTTGRIVQLTHVAPTLQANIRAKRREEFKAQL-SGPTEEVGPESSRW 232
P PLILD +GRTVD TG+ ++LTH PTL+ANIRA +RE+FK QL P+E++ ES+ +
Sbjct: 253 PTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDM--ESNTF 310
Query: 233 VDPRVSSXPHARAXRPLR 286
DPRVS P R R +
Sbjct: 311 FDPRVSIAPSQRQRRTFK 328
>BC000184-1|AAH00184.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 82.6 bits (195), Expect = 2e-16
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +2
Query: 56 PAPLILDREGRTVDTTGRIVQLTHVAPTLQANIRAKRREEFKAQL-SGPTEEVGPESSRW 232
P PLILD +GRTVD TG+ ++LTH PTL+ANIRA +RE+FK QL P+E++ ES+ +
Sbjct: 253 PTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDM--ESNTF 310
Query: 233 VDPRVSSXPHARAXRPLR 286
DPRVS P R R +
Sbjct: 311 FDPRVSIAPSQRQRRTFK 328
>AL611942-1|CAH70312.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 82.6 bits (195), Expect = 2e-16
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +2
Query: 56 PAPLILDREGRTVDTTGRIVQLTHVAPTLQANIRAKRREEFKAQL-SGPTEEVGPESSRW 232
P PLILD +GRTVD TG+ ++LTH PTL+ANIRA +RE+FK QL P+E++ ES+ +
Sbjct: 253 PTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDM--ESNTF 310
Query: 233 VDPRVSSXPHARAXRPLR 286
DPRVS P R R +
Sbjct: 311 FDPRVSIAPSQRQRRTFK 328
>AK222825-1|BAD96545.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog protein.
Length = 683
Score = 82.6 bits (195), Expect = 2e-16
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +2
Query: 56 PAPLILDREGRTVDTTGRIVQLTHVAPTLQANIRAKRREEFKAQL-SGPTEEVGPESSRW 232
P PLILD +GRTVD TG+ ++LTH PTL+ANIRA +RE+FK QL P+E++ ES+ +
Sbjct: 253 PTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDM--ESNTF 310
Query: 233 VDPRVSSXPHARAXRPLR 286
DPRVS P R R +
Sbjct: 311 FDPRVSIAPSQRQRRTFK 328
>AF016370-1|AAC51926.1| 683|Homo sapiens U4/U6 small nuclear
ribonucleoprotein hPrp3 protein.
Length = 683
Score = 82.6 bits (195), Expect = 2e-16
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +2
Query: 56 PAPLILDREGRTVDTTGRIVQLTHVAPTLQANIRAKRREEFKAQL-SGPTEEVGPESSRW 232
P PLILD +GRTVD TG+ ++LTH PTL+ANIRA +RE+FK QL P+E++ ES+ +
Sbjct: 253 PTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDM--ESNTF 310
Query: 233 VDPRVSSXPHARAXRPLR 286
DPRVS P R R +
Sbjct: 311 FDPRVSIAPSQRQRRTFK 328
>AF001947-1|AAC09069.1| 682|Homo sapiens U4/U6-associated RNA
splicing factor protein.
Length = 682
Score = 80.6 bits (190), Expect = 8e-16
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +2
Query: 56 PAPLILDREGRTVDTTGRIVQLTHVAPTLQANIRAKRREEFKAQL-SGPTEEVGPESSRW 232
P PLILD +GRTVD TG+ + +TH PTL+ANIRA +RE+FK QL P+E++ ES+ +
Sbjct: 253 PTPLILDEQGRTVDATGKEISVTHRMPTLKANIRAVKREQFKQQLKEKPSEDM--ESNTF 310
Query: 233 VDPRVSSXPHARAXRPLR 286
DPRVS P R R +
Sbjct: 311 FDPRVSIAPSQRQRRTFK 328
>AL133227-3|CAI40553.1| 196|Homo sapiens solute carrier family 35,
member C2 protein.
Length = 196
Score = 34.3 bits (75), Expect = 0.071
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 173 PHVSSLLCSPEAWAPRG*VELSCPWCPRCDPHGPRSGGQVP-TPASMIRH 27
PH S+ SP W PR V + P PRC S ++P TP S H
Sbjct: 113 PHSSTWRASPWCWGPRSSVAFAGP-SPRCSCRRLNSASRIPSTPCSTCSH 161
>BC065833-1|AAH65833.1| 241|Homo sapiens F-box and leucine-rich
repeat protein 22 protein.
Length = 241
Score = 31.5 bits (68), Expect = 0.50
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = +2
Query: 119 LTHVAPTLQANIRAKRREEFKAQLSGPTEEVGPESSRWVDPRVSSXPHARA 271
L V L A +R+ RR E A SG VGP+S RW P S R+
Sbjct: 106 LLRVCDRLSA-VRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRS 155
>BC110812-1|AAI10813.1| 238|Homo sapiens complement component 1,
q subcomponent-like 4 protein.
Length = 238
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 89 CDPHGPRSGGQVPTPASMIRHP 24
CDPHGPR G PAS+ P
Sbjct: 32 CDPHGPRGPGPDGAPASVPPFP 53
>BC064989-1|AAH64989.1| 423|Homo sapiens family with sequence
similarity 43, member A protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.0
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Frame = +2
Query: 17 LAGGALSSTPGSGPAPLIL----DREGRTVDTTGRIVQLT--HVAPTLQANIRAKR---- 166
L GG S PG+GP PL+L D + + +L+ + TLQA++R R
Sbjct: 325 LGGGGGSLGPGAGPPPLLLGSASDMKAELSQLISDLGELSFGNDVRTLQADLRVTRLLSG 384
Query: 167 ---REEFKAQLSGP--TEEVGPESSRWVDPRVSSXPHA 265
E + GP T +SSR D + PH+
Sbjct: 385 DSTGSESSIEGGGPDATSATAGDSSRQADGASADEPHS 422
>BC039689-1|AAH39689.1| 423|Homo sapiens family with sequence
similarity 43, member A protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.0
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Frame = +2
Query: 17 LAGGALSSTPGSGPAPLIL----DREGRTVDTTGRIVQLT--HVAPTLQANIRAKR---- 166
L GG S PG+GP PL+L D + + +L+ + TLQA++R R
Sbjct: 325 LGGGGGSLGPGAGPPPLLLGSASDMKAELSQLISDLGELSFGNDVRTLQADLRVTRLLSG 384
Query: 167 ---REEFKAQLSGP--TEEVGPESSRWVDPRVSSXPHA 265
E + GP T +SSR D + PH+
Sbjct: 385 DSTGSESSIEGGGPDATSATAGDSSRQADGASADEPHS 422
>AK074503-1|BAC11027.1| 423|Homo sapiens protein ( Homo sapiens
cDNA FLJ90022 fis, clone HEMBA1000907. ).
Length = 423
Score = 29.5 bits (63), Expect = 2.0
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Frame = +2
Query: 17 LAGGALSSTPGSGPAPLIL----DREGRTVDTTGRIVQLT--HVAPTLQANIRAKR---- 166
L GG S PG+GP PL+L D + + +L+ + TLQA++R R
Sbjct: 325 LGGGGGSLGPGAGPPPLLLGSASDMKAELSQLISDLGELSFGNDVRTLQADLRVTRLLSG 384
Query: 167 ---REEFKAQLSGP--TEEVGPESSRWVDPRVSSXPHA 265
E + GP T +SSR D + PH+
Sbjct: 385 DSTGSESSIEGGGPDATSATAGDSSRQADGASADEPHS 422
>DQ363529-1|ABC88012.1| 1099|Homo sapiens low-voltage-activated
calcium channel alpha1H subunit splice variant 577
protein.
Length = 1099
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 110 SCPWCPRCDPHGPRS 66
+CPW P +PHGP +
Sbjct: 854 ACPWQPTAEPHGPEA 868
>DQ363528-1|ABC88011.1| 1083|Homo sapiens low-voltage-activated
calcium channel alpha1H subunit splice variant 544
protein.
Length = 1083
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 110 SCPWCPRCDPHGPRS 66
+CPW P +PHGP +
Sbjct: 838 ACPWQPTAEPHGPEA 852
>DQ363527-1|ABC88010.1| 1088|Homo sapiens low-voltage-activated
calcium channel alpha1H subunit splice variant 513
protein.
Length = 1088
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 110 SCPWCPRCDPHGPRS 66
+CPW P +PHGP +
Sbjct: 843 ACPWQPTAEPHGPEA 857
>DQ363526-1|ABC88009.1| 1077|Homo sapiens low-voltage-activated
calcium channel alpha1H subunit splice variant 512
protein.
Length = 1077
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 110 SCPWCPRCDPHGPRS 66
+CPW P +PHGP +
Sbjct: 832 ACPWQPTAEPHGPEA 846
>AJ420779-1|CAD12646.1| 2347|Homo sapiens calcium channel,
voltage-dependent, T type, alphant regulator of
chromatin, sub protein.
Length = 2347
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 110 SCPWCPRCDPHGPRS 66
+CPW P +PHGP +
Sbjct: 2102 ACPWQPTAEPHGPEA 2116
>AF223563-1|AAF60163.1| 1536|Homo sapiens low-voltage-activated
calcium channel alpha13.2 subunit delta25B splice variant
protein.
Length = 1536
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 110 SCPWCPRCDPHGPRS 66
+CPW P +PHGP +
Sbjct: 1291 ACPWQPTAEPHGPEA 1305
>AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated
calcium channel alpha 1H protein.
Length = 2353
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 110 SCPWCPRCDPHGPRS 66
+CPW P +PHGP +
Sbjct: 2108 ACPWQPTAEPHGPEA 2122
>AF051946-1|AAC67239.3| 2353|Homo sapiens T-type calcium channel alpha
1H subunit protein.
Length = 2353
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 110 SCPWCPRCDPHGPRS 66
+CPW P +PHGP +
Sbjct: 2108 ACPWQPTAEPHGPEA 2122
>AE006466-3|AAK61268.1| 2373|Homo sapiens voltage dependent t-type
calcium channel alpha-1H subunit protein.
Length = 2373
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 110 SCPWCPRCDPHGPRS 66
+CPW P +PHGP +
Sbjct: 2128 ACPWQPTAEPHGPEA 2142
>BC023533-1|AAH23533.2| 435|Homo sapiens PLEKHO1 protein protein.
Length = 435
Score = 24.2 bits (50), Expect(2) = 2.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 173 PHVSSLLCSPEAWAP 129
PHVS L +P WAP
Sbjct: 16 PHVSPLSTAPAHWAP 30
Score = 23.4 bits (48), Expect(2) = 2.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -2
Query: 95 PRCDPHGPRSGGQVPTPASMI 33
P P GP+ G Q P P +
Sbjct: 65 PPSSPSGPQDGNQQPAPPEKV 85
>Z97832-1|CAI20187.1| 993|Homo sapiens protein ( Human DNA sequence
from clone RP3-329A5 on chromosome 6p21.1-21.33
Contains the gene for a novel EGF-like and CUB domain
protein ).
Length = 993
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 116 ELSCPWCPRCDPHGPRSGGQVPTPA 42
+LSC CP D HGP V T A
Sbjct: 666 QLSCDLCPGSDAHGPLGATNVTTCA 690
>BC052263-1|AAH52263.2| 992|Homo sapiens signal peptide, CUB
domain, EGF-like 3 protein.
Length = 992
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 116 ELSCPWCPRCDPHGPRSGGQVPTPA 42
+LSC CP D HGP V T A
Sbjct: 665 QLSCDLCPGSDAHGPLGATNVTTCA 689
>AY639608-1|AAU08347.1| 993|Homo sapiens signal peptide, CUB and
EGF-like domain containing protein 3 protein.
Length = 993
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 116 ELSCPWCPRCDPHGPRSGGQVPTPA 42
+LSC CP D HGP V T A
Sbjct: 666 QLSCDLCPGSDAHGPLGATNVTTCA 690
>AK092062-1|BAC03798.1| 880|Homo sapiens protein ( Homo sapiens
cDNA FLJ34743 fis, clone MESAN2009019, moderately
similar to CEGP1 protein. ).
Length = 880
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 116 ELSCPWCPRCDPHGPRSGGQVPTPA 42
+LSC CP D HGP V T A
Sbjct: 553 QLSCDLCPGSDAHGPLGATNVTTCA 577
>AK092010-1|BAC03789.1| 581|Homo sapiens protein ( Homo sapiens
cDNA FLJ34691 fis, clone MESAN2000909, moderately
similar to Homo sapiens CEGP1 protein (CEGP1), mRNA. ).
Length = 581
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 116 ELSCPWCPRCDPHGPRSGGQVPTPA 42
+LSC CP D HGP V T A
Sbjct: 254 QLSCDLCPGSDAHGPLGATNVTTCA 278
>AF452494-1|AAN76808.1| 993|Homo sapiens CUB and EGF containing
protein protein.
Length = 993
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 116 ELSCPWCPRCDPHGPRSGGQVPTPA 42
+LSC CP D HGP V T A
Sbjct: 666 QLSCDLCPGSDAHGPLGATNVTTCA 690
>AK026838-1|BAB15568.1| 149|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23185 fis, clone LNG11762. ).
Length = 149
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 89 CDPHGPRSGGQVPTPASMIRHPLQV 15
C PHGPRS VP P S P V
Sbjct: 22 CSPHGPRSSDPVP-PTSPFLPPCSV 45
>U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate receptor
2D subunit precursor protein.
Length = 1336
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 98 CPRCDPHGPRSGGQVPTPASMIRH 27
CPR PH PR+ + P A+ H
Sbjct: 1228 CPRSHPHRPRASHRTPAAAAPHHH 1251
>BC051688-1|AAH51688.2| 439|Homo sapiens hypothetical protein
FLJ10781 protein.
Length = 439
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 71 LDREGRTVDTTGRIVQLTHVAPTLQAN 151
LD EGRT + R++QL H PTL N
Sbjct: 114 LDAEGRTWEDVVRLLQLNH--PTLSQN 138
>BC032508-1|AAH32508.1| 439|Homo sapiens hypothetical protein
FLJ10781 protein.
Length = 439
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 71 LDREGRTVDTTGRIVQLTHVAPTLQAN 151
LD EGRT + R++QL H PTL N
Sbjct: 114 LDAEGRTWEDVVRLLQLNH--PTLSQN 138
>AL834344-1|CAD39010.1| 378|Homo sapiens hypothetical protein
protein.
Length = 378
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 71 LDREGRTVDTTGRIVQLTHVAPTLQAN 151
LD EGRT + R++QL H PTL N
Sbjct: 114 LDAEGRTWEDVVRLLQLNH--PTLSQN 138
>AL392043-11|CAI39951.1| 222|Homo sapiens novel protein protein.
Length = 222
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -2
Query: 110 SC-PWCPRCDPHGPRSGGQVPTPAS 39
SC PWC R P R+ PTP+S
Sbjct: 12 SCWPWCCRRAPRATRTAALQPTPSS 36
>AB209292-1|BAD92529.1| 610|Homo sapiens N-methyl-D-aspartate
receptor subunit 2D precursor variant protein.
Length = 610
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 98 CPRCDPHGPRSGGQVPTPASMIRH 27
CPR PH PR+ + P A+ H
Sbjct: 502 CPRSHPHRPRASHRTPAAAAPHHH 525
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,707,307
Number of Sequences: 237096
Number of extensions: 913260
Number of successful extensions: 3208
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 3009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3202
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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