Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1763
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 59 6e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 52 5e-08
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 50 2e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 49 7e-07
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 45 1e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 43 4e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 43 4e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 41 2e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 2e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 39 7e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.002
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 37 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.004
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.005
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 36 0.007
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 34 0.015
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.020
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 34 0.020
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.027
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.036
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.062
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.062
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 32 0.083
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 31 0.11
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 31 0.11
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.14
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.19
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 29 0.44
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.44
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 29 0.77
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 28 1.3
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 3.1
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 3.1
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 4.1
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 5.4
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 5.4
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 9.5
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 9.5
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 25 9.5
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 9.5
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 25 9.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.8 bits (136), Expect = 6e-10
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = +1
Query: 199 ALPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMG 378
A+P ++ K+FVGG+P T++ R F +G + +A ++ D+ T + RG+GFV
Sbjct: 237 AIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
Query: 379 DRTAAERACKDPNPIIDGRKANVNLA 456
+ +A E P I G+ V A
Sbjct: 297 NESAVEATMSQPYITIHGKPVEVKRA 322
Score = 54.8 bits (126), Expect = 1e-08
Identities = 21/46 (45%), Positives = 34/46 (73%)
Frame = +1
Query: 232 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 369
K+F+GGL + TTD SLR++F +G++ + V+ D T +SRG+GF+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFL 209
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 52.4 bits (120), Expect = 5e-08
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 205 PGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDR 384
P Q +FVG L ++ D+ L + F YG I A VI D Q+ +S+GYG+V
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 385 TAAERA-CKDPNPIIDGRKANVNLA 456
AA+ A + IDGR N++L+
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLS 339
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 414
+FVG L ++ T+ L F GDI+ + TD Q+ + +G+G+V D +A++ +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 415 NPIIDGRKANVNLA 456
I GR ++ +
Sbjct: 428 GHFIAGRPCRLDFS 441
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 50.4 bits (115), Expect = 2e-07
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD- 411
LFV L + T L F+ G I+ AVV+T+ +T ++RGYGFV A+RA K+
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 412 PNPIIDGRKANVNLA 456
N + GR ++ A
Sbjct: 67 KNKKLHGRILRLDFA 81
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 369
+FV L + T++ L HF +G + A ++ D T++S G GF+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFI 323
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 48.8 bits (111), Expect = 7e-07
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGD 381
LFVG L + TTD L+EHF G I ++T T K +G+GFV D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 44.8 bits (101), Expect = 1e-05
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +1
Query: 217 DTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAE 396
D +LFVG L D+SL + F+ Y + + V+ DR+ K+RG+GFV D
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84
Query: 397 RACKDPN-PIIDGRKANVNLAILGAKP 474
+A ++ N I R ++ A KP
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKP 111
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV-IMGDRT-AAERACK 408
LFVG LP ++ ++L+ HF G + + TD+ + + +GY FV + +T +A K
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 409 DPNPIIDGRKANVNLAILG 465
+ I RK N+ L G
Sbjct: 154 FHHTIYKERKINIELTAGG 172
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 42.7 bits (96), Expect = 4e-05
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 2/140 (1%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 414
LF+ L D+ L+ F+ +G I A ++TD Q KS+G+GFV A +A +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424
Query: 415 NP-IIDGRKANVNLAILGAKPRXNLAPGFGLXXXXXXGVRAXYPTVLPA-HYGLXPGYVY 588
N ++ G+ V LA R L + +PA YG +Y
Sbjct: 425 NQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIY 484
Query: 589 GTPSSWAL*XASVGGVWCPL 648
G P + + A+V G P+
Sbjct: 485 G-PGGYPI-PAAVNGRGMPM 502
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +1
Query: 226 WTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERAC 405
+T +++ L T++ + F +G+I ++ D Q +K RG+GFV + A++A
Sbjct: 260 FTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAV 318
Query: 406 KDPN 417
+ N
Sbjct: 319 DELN 322
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 199 ALPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMG 378
A P T L+VG L T+ L E F G + V D T +S GY +V
Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFH 129
Query: 379 DRTAAERACKDPN-PIIDGRKANV 447
+ E+A + N +I GR +
Sbjct: 130 NMEDGEKALDELNYTLIKGRPCRI 153
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK-D 411
+F+ L Y T + + F YG IE V+ ++ T KS GY FV+ + A K
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 412 PNPIIDGRKANVNL 453
+++GR+ V++
Sbjct: 162 AGLMLNGRRIVVDV 175
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 220 TTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGD-RTAAE 396
T +FVG +PY +++ + E F G ++ ++ D +T +GYGF D T A
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
Query: 397 RACKDPNPIIDGRKANV 447
K N + RK V
Sbjct: 64 AVRKLNNSELGPRKIRV 80
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 40.3 bits (90), Expect = 2e-04
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAV-YGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 411
+FVG L + + + FA Y + A ++TD QTN SRGYGFV D + A +
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 412 PNPIIDG-RKANVNLA 456
I G R V LA
Sbjct: 248 MQGQICGDRPIRVGLA 263
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +1
Query: 202 LPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGD 381
+P DT + +FVGGL +++ L+ F +G+I V + + +G GFV +
Sbjct: 294 VPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEI---VYV---KIPPGKGCGFVQFVN 347
Query: 382 RTAAERA 402
R +AE A
Sbjct: 348 RQSAEIA 354
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 38.7 bits (86), Expect = 7e-04
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAA 393
+++ GLP +T+D++L + +G + + I D +TN +GYGF + +A
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA 350
Score = 34.7 bits (76), Expect = 0.012
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +1
Query: 202 LPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGD 381
L +DT T L++ LP H + + F I V+ ++ +SRG GF M D
Sbjct: 375 LQSLQDTESTNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKE--QSRGVGFARMQD 432
Query: 382 RTAAE 396
R AE
Sbjct: 433 RKTAE 437
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +1
Query: 232 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 411
+L+V + + +K + F YG +E + ++ N+ +G+G+V+M AE A
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRI--PKRFNQHKGFGYVVMTTNQDAENALSA 815
Query: 412 PNPIIDGRKANVNLAILGAKPRXNL 486
+ R NV L +KPR +L
Sbjct: 816 AGKQLGNRVLNVVL----SKPRESL 836
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 232 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA 402
+LF+ L Y + L+ F +G +E+ + D++TN +G+ ++ D A RA
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 229 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGF 366
TK+ + LP+ T K ++ YG + +V + + +RG+ F
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQL-RSVRVPKKFDRSARGFAF 765
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 37.1 bits (82), Expect = 0.002
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 369
++VG + Y T + L+ HFA G + ++ D+ T +G+ ++
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYI 101
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 414
++VG +PY ++ + + F G ++ ++ D ++ + +GYGF D A A ++
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 415 N 417
N
Sbjct: 67 N 67
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.9 bits (79), Expect = 0.005
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 232 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 411
+L V + ++ TD+ ++ F +GDIE + D Q N+S+G+G++ + +A A +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNALEK 399
Query: 412 PNPI-IDGRKANVNL 453
N + GR V L
Sbjct: 400 MNGFDLAGRNMRVCL 414
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA 402
+FVG L + ++ L +F G I+ ++ D +TN +G+ ++ D ++A
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKA 327
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 34.3 bits (75), Expect = 0.015
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 369
L+VG LP+ +K +R +F+ +G + + +R+T S+ Y F+
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 33.9 bits (74), Expect = 0.020
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 414
+ V G+ T++ + + FA +G ++ + DR+T +GY + A++A +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 415 NPIIDGRKANVNLAIL 462
N + K V+ A L
Sbjct: 72 NLSLLDEKLEVDFAFL 87
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.9 bits (74), Expect = 0.020
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 414
LFVG L ++ L + F+ G + +A + + +S+GYGFV A+ A +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 415 N 417
N
Sbjct: 161 N 161
Score = 30.3 bits (65), Expect = 0.25
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 414
+++G L TD L E G + + DR N G+GF E AC+
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 415 NPI-IDGRKANVNLA 456
N + + G+ VN A
Sbjct: 73 NQVKLFGKPIRVNRA 87
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 209 ARKIPPGPNFSSADCRTTQPIKVFGNILRFTATSKKP 319
A IPP PN T P N+L FTA P
Sbjct: 233 ATSIPPVPNVPLVGATTAVPPLSIPNVLPFTAAQHFP 269
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.5 bits (73), Expect = 0.027
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 205 PGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDR 384
P + LFV G+ + L++ F+ +G + ++ + T SRG+GF+
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 385 TAAERACKDPN-PIIDGRKANVNLA 456
A A + N GR NV A
Sbjct: 153 EEATSAIDNLNSQEFYGRVLNVQKA 177
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.1 bits (72), Expect = 0.036
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 369
++VG LP+ T+D++L + F G + A + + T +S+G+G V
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVV 325
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 250 LPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA 402
LPY+ + L++ F G + A + + Q +SRG G V+M A A
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMN-QEGRSRGIGIVVMSSMKEAMHA 239
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.3 bits (70), Expect = 0.062
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 199 ALPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIE 312
++PGQ + + ++VG + +D+ + +HF+ YG +E
Sbjct: 7 SVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVE 44
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 262 TTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPIIDGRK 438
T L + F+ +G I +++ + S+GYGFV AA RA N ++ G+K
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKK 453
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.3 bits (70), Expect = 0.062
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 271 KSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPIIDGRK 438
+ L E F+ +G I+ + + T S+GYGFV A +A N ++ G+K
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKK 490
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 31.9 bits (69), Expect = 0.083
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 369
++VG L ++TT++ + F+ G+I ++ DR T G+ FV
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFV 78
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +1
Query: 214 KDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAA 393
KD LF+ G+ D +R+HF YG + ++VV + R K F A
Sbjct: 207 KDKKIASLFLIGVEDELADYKIRKHFEQYGPL-KSVVCSHRA--KCAFVNFKTRSSAEIA 263
Query: 394 ERACKDPNPIIDGRKANV 447
A D N +I+G + V
Sbjct: 264 AAASPDGNVVIEGFRLKV 281
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 109 VKVAGATEAVXGMLMAGALPAESDGLLALGALPGQKDTTWTKLFVGGLPYHTTDKSLREH 288
V V +E G++ +G A++D +L G G + WT + GLP+ +
Sbjct: 1086 VSVKLVSEVGVGIVASGVAKAKADHILVSGHDGGTGASRWTGIKYAGLPWELGVAETHQT 1145
Query: 289 FAVYGDIEEAVVI-TDRQTNKSR 354
V D+ VVI TD Q R
Sbjct: 1146 L-VLNDLRGRVVIQTDGQIRTGR 1167
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 31.1 bits (67), Expect = 0.14
Identities = 11/50 (22%), Positives = 29/50 (58%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDR 384
+++G L + + + F+ +G+ + ++ D++T KS+G+ F+ D+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQ 82
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 211 QKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDR 336
Q+ +F+G LP T+ +RE +G I++ ++T+R
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 235 LFVGGL-PYHTTDKSLREHFAVYGDIEEAVVITDR 336
L+VGG+ P ++ + HFA +GDIE V+ R
Sbjct: 176 LYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSR 210
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.5 bits (63), Expect = 0.44
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 229 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA 402
T +FVGGL + ++K L+ F +G I + +G GFV +++AAE+A
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKA 348
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 28.7 bits (61), Expect = 0.77
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 408
LF+ L + T + + + F YG + + I T ++RG FV+ + A RAC+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ---IRLGNTVQTRGTAFVVYENVQDARRACE 68
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 229 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 408
T+LFVG +P T + + + F YG I + ++ G+GFV + D A
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVN 55
Query: 409 D 411
D
Sbjct: 56 D 56
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 235 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV--IMGDRTAAERACK 408
+ V L + T + + E F +YG I+ + +++ ++GY ++ + D+ AA K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQ-AANAVDK 159
Query: 409 DPNPIIDGRKANVNL 453
N +DG + V++
Sbjct: 160 MNNAELDGEELFVSI 174
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 111 KGGRRNGGGAXHVDGGRSAGR 173
+GGRR GG H D GR R
Sbjct: 96 RGGRRERGGRVHGDSGRLRSR 116
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 206 RARKIPPGPNFSSADCRTTQPIKVFGNILRFTATSKKPSSLQTD 337
+AR IPP P S+ ++ KV G+I R + K PS+ D
Sbjct: 63 KARPIPP-PRQVSSTIGSSTGRKVSGSIQRLASNFKNPSNPHAD 105
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 199 ALPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 369
A+P + +T VG L + T+ L + F + ++ D T +SRG+G+V
Sbjct: 85 AIPIPSEPPFTA-HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYV 138
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 248 PPTKSLVQVVSFWPGNAPKARSPSDSAGRAPAIN 147
PP S+ Q+ SF P P + SPS + A IN
Sbjct: 42 PPPFSVHQLQSFVPPQPPSSSSPSTTGTVAVPIN 75
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 111 KGGRRNGGGAXHVDGGRSAGRVRWTSGFGRIAGPERY 221
+GGR GGA GG S GR G I P R+
Sbjct: 44 RGGRGGRGGARGGRGGSSGGRGGAKGGAKVIIEPHRH 80
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 229 TKLFVGGLPYHTTDKSLREHFAVYGDIE 312
T +FV +P T+D SL+ +++G ++
Sbjct: 315 TSVFVKNIPPETSDVSLKSAMSIFGPVK 342
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 221 PPGPNFSSADCRTTQ-PIKVFGNILRFTATSKKPSSL 328
P P A+ TT+ P K+F +I FT+ PS+L
Sbjct: 524 PNEPPMQDAEPETTEDPSKLFADIFDFTSNYFIPSAL 560
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 414 RIFTRSLRCSPITHYHKAISSALVGLSVCNDDGFFDVAVNRKMFPKTFI 268
R+ T+SL S I + I S L G+ V ND + V PK FI
Sbjct: 502 RLCTKSLILSEI---NIQIGSGLFGIKVSNDQNYLLVNYLGPEIPKQFI 547
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 436 SYHL*WDSDLYTLSP 392
+YH W DLYTL+P
Sbjct: 100 AYHGYWPQDLYTLNP 114
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 601 NSEFRTHIQEXTHSAPVKQSDSXPSLLQPRQRPSQT 494
+ + +H+Q T +APV + S P+ L ++P Q+
Sbjct: 340 SDKLSSHVQSETENAPVSK-PSKPNTLTEDEKPLQS 374
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 9.5
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Frame = -3
Query: 534 CPHSCSRGSGQ-AKPWCEIPSRFSSKNSEVNVSLPTIYDG-IRIFTR-------SLRCSP 382
C +C +G K W +P FS V L I+ G +RI +R L+CS
Sbjct: 148 CVKACGKGIKHFLKKWENMPMAFSE------VFLFNIFGGALRIISRHFFGKRWGLKCSL 201
Query: 381 ITHYHKAISSALVGLSVCNDDGFFDVAVNRKM 286
H AI S LV ++ G V + RKM
Sbjct: 202 ADHIIFAILSILVFIAETVKPGSIRVNLIRKM 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,803
Number of Sequences: 5004
Number of extensions: 55434
Number of successful extensions: 210
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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