Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1763
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           25   1.6  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   3.6  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   3.6  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   6.3  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    23   6.3  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 138 AXHVDGGRSAGRVRWTSGFGRIAGP 212
           A   D  R++G   W SG G + GP
Sbjct: 211 AASADPSRNSGPSSWMSGAGSVGGP 235


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 265 LCGT-AVRRRKVWSRWYL 215
           LCG  + ++RK+ SRWYL
Sbjct: 559 LCGEKSAKKRKLPSRWYL 576


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 247 RRRKVWSRWYLSGPAMRPKPEVHRTRPAERPPS 149
           R RK   RW +  P M   P+ H T P+   P+
Sbjct: 349 RPRKTRLRWMMEMPGMSVPPQPH-THPSYGSPA 380


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 194  KARSPSDSAGRAPAINMPCTASVAPAT 114
            +A +PS SA  A  +  P  AS +PAT
Sbjct: 923  EASTPSTSAMAATIVPNPVQASPSPAT 949


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -3

Query: 192 SQKSIGLGRQSARHQHAXHRLRCAGHL 112
           S  S+G+G     H H  H      HL
Sbjct: 337 SAMSMGMGSMGLHHHHPGHHAALHAHL 363


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,461
Number of Sequences: 2352
Number of extensions: 14813
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)