Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1761
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   217   1e-57
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    29   0.44 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.0  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.3  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    26   5.4  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.2  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   7.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   7.2  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   9.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   9.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.5  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  217 bits (530), Expect = 1e-57
 Identities = 101/162 (62%), Positives = 127/162 (78%), Gaps = 1/162 (0%)
 Frame = +2

Query: 155 KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFA 334
           ++ KPAPDF  TAVVNG F ++KL+D+ GK+V L FYPLDFTFVCPTE++AFS+ A  FA
Sbjct: 4   QIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFA 63

Query: 335 GIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-GFAL 511
             + QVI  STDSE+SHLA+INTPRK+GGLG + IPLLAD   ++S+DY VL++D G A 
Sbjct: 64  ERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAF 123

Query: 512 RGLFIIDRNGTLRHMSVNDLPVGRXVDETLRLVKAXQFADXH 637
           RGLF+ID  G LR +++NDLPVGR VDE LRL+ A QF + H
Sbjct: 124 RGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEH 165


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 218 LKLSDFTG-KYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW 394
           ++L D T  K +V+F YP   T  C  +   F D        D +V+G+S D+  +  A+
Sbjct: 65  IRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDTSKAQKAF 124


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 125 FSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTE 298
           F+ +S+T     Q P P F   +  +G+F     +    K V L  YP   TF   TE
Sbjct: 257 FTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 649 HTFXVLVGELXGLDQAERLVHXAAHGQIVHRHVTQGA 539
           H F +LVGEL  +D     V    H   VH    +G+
Sbjct: 530 HPFGMLVGELGSMDSMSAQVSALLHDTGVHSEPWEGS 566


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 104 KVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTF 283
           KV +R N    +T   P++        A ++++   N++  +DF GK+ +++F       
Sbjct: 79  KVLERQNDKVLATIGRPQLG------GAFSLIDHHGNRVTDNDFKGKFSLIYFGFTRCPD 132

Query: 284 VCPTEL 301
           +CP EL
Sbjct: 133 ICPDEL 138


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 290 PTELIAFSDKAKDFAG-IDCQVIGVSTDSEFSHLAWINTPRKD--GGLGKMEIP 442
           PT+L+AF  + + + G +  +V+ VS D E   L  +N P ++  G  G M  P
Sbjct: 182 PTKLVAFKQRKERYPGELQWEVL-VSQDEE--RLRKLNLPLREPHGSTGPMSTP 232


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 92  SPAFKVAKRINFSTTSTTRAPKVQKPA 172
           +PA KV+ R +FS      AP V++PA
Sbjct: 160 NPAVKVSLRQSFSHLCHDEAPMVRRPA 186


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 40  HARKNVVHCEATKSKCTVAGFQSSKKD 120
           H  K+  HC     KC+V GF    +D
Sbjct: 813 HLGKSCPHCGQPLPKCSVCGFSLGDED 839


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 137 STTRAPKVQKPAP 175
           STT  PKVQKP P
Sbjct: 362 STTTQPKVQKPVP 374


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +3

Query: 216 NLNFQISRENT*FCSSIHWISHLYVRQSS*RSVIKLKTLLESIVR*LECPQTLSSVISHG 395
           NLNFQ+ R    F S++        R +  +S + L++ +       E  +T+  +I   
Sbjct: 724 NLNFQVGRSKIFFRSNVIGNFEEAHRATCSKSTVLLQSAIRGFFTRKEYQRTVKFIIKLQ 783

Query: 396 STLLG 410
           S ++G
Sbjct: 784 SVIMG 788


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 178 VWSRLLNFRSSCSAGRRKINPFCYF 104
           +W+R+L    SC A   K N + YF
Sbjct: 552 IWARILAVDDSCQADLLKDNGYGYF 576


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 319  FITERYELCRTYKCEIQWIEEQNYVF 242
            F T+ + L RT+K +++WI+  N ++
Sbjct: 2536 FFTDSH-LIRTFKLDVRWIQIDNQLY 2560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,505
Number of Sequences: 5004
Number of extensions: 50857
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)