Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1759
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    29   0.58 
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    27   4.1  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    26   5.4  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   7.2  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   9.5  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   9.5  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   9.5  

>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 184 VTIGFFNAYGLANQRDQVSDFLRDHQIDIFL 276
           V IGF + +GL+ Q  + +D L +H++ I+L
Sbjct: 43  VLIGFMDVFGLSKQIKEGADQLANHELAIYL 73


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 181 SVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKP 300
           SV  G    YG +       +FL+ H ID FLV    LKP
Sbjct: 199 SVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKP 238


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +1

Query: 184 VTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKP---ARRDPKIANYNMVRNDRL 354
           V IGF + +GL++Q  + +D L D    ++L      KP       PK      + ND  
Sbjct: 44  VLIGFMDIFGLSDQIKEGADKLADDGFTVYLPDFLEGKPLPVTALPPKTPEDQKLCNDFF 103

Query: 355 SAR 363
           S R
Sbjct: 104 STR 106


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 397 LHCVPLDPPALANIEASVCRISLTGHAPIVIVSVYLPPDKIVLS 528
           L CV    P++   E  +C+ + TGH   ++     P  K ++S
Sbjct: 487 LQCVSNVAPSMYK-EGGICKQTFTGHKDFILSVTVSPDGKWIIS 529


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 34  GDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLRR*SMAYISRIKPLSVTIG 195
           G   R     + F  V+Q+Y   Y +  +  L +     +AY+   +PLS+++G
Sbjct: 159 GSNQRCIDLLKTFKIVIQDYQTPYGTTLSRHLTTHINSQIAYLVSTRPLSISMG 212


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 247 LRDHQIDIFLVQETLLKPARRDPKIANYNM 336
           L+ H + +FL+  TL++  +++  + NYN+
Sbjct: 240 LKPHDM-VFLISNTLVEANKQETALTNYNL 268


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 314 LKSRTITWSGTTGSLPVVVVPSFTIEEPCIASRSILPRSLISKHQ 448
           + S    ++ +   +P +  PSFT++E C +     P  + +K Q
Sbjct: 181 INSNVNKYASSQSFIPPLEEPSFTVKEKCPSGHPPWPAGICTKCQ 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,560
Number of Sequences: 5004
Number of extensions: 60503
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)