Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1759
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0361 + 33377781-33378458                                         31   1.4  
12_01_0378 - 2946916-2947590                                           29   4.3  
03_06_0156 + 32035503-32035769,32036436-32036539,32036734-320368...    28   7.5  

>03_06_0361 + 33377781-33378458
          Length = 225

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 399 QGSSIVNDGTTTTGREPVVPDHVIVRDFRVTARGLK 292
           Q   +V  G+T  G +P +PD V+ + F+V A+ +K
Sbjct: 184 QMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIK 219


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 292 LKPARRDPKIANYNMV-RNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCR 456
           ++ A    +++N  +V RN      G G V+YYR A++    +P   A +     R
Sbjct: 39  IRAAVESAELSNLTVVVRNGTADGGGSGGVVYYRLAVNVTMYNPSGRAGVHYDAIR 94


>03_06_0156 +
           32035503-32035769,32036436-32036539,32036734-32036844,
           32036923-32037073,32037614-32037888,32037998-32038211
          Length = 373

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 196 FFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMVRN 345
           +F A+ LAN RDQ+   +     D +L   +  K A  +  I NYN  +N
Sbjct: 293 WFRAFSLANPRDQIRLAITLALYDNYLKLPSNWKRADANSDILNYNGPKN 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,352,877
Number of Sequences: 37544
Number of extensions: 458012
Number of successful extensions: 1051
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)