Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1758
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.94 
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    27   2.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.8  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   5.0  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    26   6.6  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   6.6  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   8.7  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 135 SDEKIFTVEESYNKQNDKVYAYSSEEASNRIPRVQRGHFPSSLMVWLGSFLLGLNRGTF 311
           S +K    E  +N  N   + + SE     +    R H P  ++V  G    GLN G F
Sbjct: 398 SPKKFAFSEVPFNDSNSIYHLFQSELFPKIVVNESRHHIPHYIIVNSGGIRGGLNSGAF 456


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 159 EESYNKQNDKVYAYSSEEASNRIPRVQRGHFPSSLMVWLGSFLLGLNR 302
           E++ N +N  ++ Y   + S + P    G     L  W  SFLLG+ R
Sbjct: 225 EDASNAENPNLH-YVELKTSKKYPLENYGMRKKLLKYWAQSFLLGIGR 271


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 307 HFCEKGVKTNAVVYQNTVLTNLVEPVSHTNLESLKTSLIKAAAD 438
           HF EK V  + +     +L  L      +N+E  KTSL++AA +
Sbjct: 555 HFMEKSVPGSVLANTKVILNRL-----KSNIEHAKTSLLEAAVN 593


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 327 KNECSCVSKYSPDEPCGT 380
           + +C CV K+SPD  C +
Sbjct: 243 EKDCRCVRKFSPDGSCNS 260


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -2

Query: 248 MTSLDTRNTVARFFTTVCVHLIILFVVALFYGK 150
           + ++  R  + RFFTT  + ++++ ++ + Y K
Sbjct: 180 LKTMARRLAMNRFFTTAIIAILVILILLVLYSK 212


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 455 TRSMSISAAALIKDVLSDSKLV 390
           +R++SIS   +++DV SDS LV
Sbjct: 711 SRNVSISVPTVLQDVFSDSPLV 732


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 304 VHFCEKGVKTNAVVYQNTVLTNLVEPVSHTNLESLKTSLIKAAAD 438
           +HF       N+ + Q    +  V P S+  +E LKTS  K AA+
Sbjct: 190 MHFSASKQAFNSPLLQTFSPSPSVSPFSNPAVEKLKTSASKQAAE 234


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 129 LFSDEKIFTVEESYNKQNDKVYAYSSEEASNRIPRVQRGH 248
           LF D  +   EE Y +   KV +Y   E    I   QRGH
Sbjct: 559 LFGDVSVIEAEEKYAELLSKVSSYRPSETVFEIG--QRGH 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,004
Number of Sequences: 5004
Number of extensions: 63687
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)