Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1758
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0722 + 20946201-20947327,20949531-20950791                       30   2.3  
03_03_0188 + 15269347-15270213                                         29   3.9  
12_01_1067 - 11009508-11010071,11010122-11010679                       28   6.9  

>07_03_0722 + 20946201-20947327,20949531-20950791
          Length = 795

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = -3

Query: 454 RGPCQYRRLP*SRMS*VTPNWYEKQVPQGSSGLYFDTQ--------LHSFLHLSHKNVPL 299
           R  C+++R+  S  + +    + K++PQ  SG ++ +          H F ++S K VPL
Sbjct: 30  RSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSSSGERCPCSAHHFTNVSGKGVPL 89

Query: 298 LSPN 287
           + P+
Sbjct: 90  IYPS 93



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = -3

Query: 454 RGPCQYRRLP*SRMS*VTPNWYEKQVPQGSSGLYFDT--------QLHSFLHLSHKNVPL 299
           R  C+++R+  S  + +    + K++PQ  SG ++ +          H F ++S K VPL
Sbjct: 448 RSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSISGERCPCSAHHFTNVSGKGVPL 507

Query: 298 LSPN 287
           + P+
Sbjct: 508 IYPS 511


>03_03_0188 + 15269347-15270213
          Length = 288

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 367 SSGLYFDTQLHSFLHLSHKNVPLLSPNKKLPNH 269
           SS  Y D+  H  LH S  +   +SP++  P H
Sbjct: 44  SSSSYLDSPFHGLLHTSSSSSATMSPSQAPPPH 76


>12_01_1067 - 11009508-11010071,11010122-11010679
          Length = 373

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +1

Query: 208 KKRATVFRVSNEVIFHPRSWYGWGVSYWGLTEVHFCEKGVKT--NAVVYQNTVLTNLVEP 381
           K R  V  ++N   + P+   GW ++ WG +      K VK         N  + N +E 
Sbjct: 254 KTRENVMLMNNNNGYRPQGDQGWSITPWGRSRTERTHKKVKVKPQRTDSLNAFVMNFLEQ 313

Query: 382 VSHTNLESLK 411
               N + L+
Sbjct: 314 EETRNRQHLR 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,033,919
Number of Sequences: 37544
Number of extensions: 358048
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)