Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1758
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    54   8e-08
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    33   0.22 
U97193-7|AAK68163.1|  299|Caenorhabditis elegans Yeast sir relat...    33   0.29 
AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    28   6.2  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    28   6.2  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    28   6.2  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 25/54 (46%), Positives = 38/54 (70%)
 Frame = +3

Query: 117 YREILFSDEKIFTVEESYNKQNDKVYAYSSEEASNRIPRVQRGHFPSSLMVWLG 278
           +R++LF+DEKIF +E+S+N QND+VYA +   +     RVQR  +P  +MV+ G
Sbjct: 213 HRKVLFTDEKIFCIEQSFNTQNDRVYAKTQPNS-----RVQRTGYPKGIMVFAG 261



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/36 (50%), Positives = 28/36 (77%)
 Frame = +1

Query: 388 HTNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKA 495
           H N++SLK SL KA  ++D++ +RA +D +PRRL+A
Sbjct: 364 HRNIDSLKDSLKKAWDELDINYLRATVDSFPRRLEA 399



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +1

Query: 436 DIDMDLVRAAIDDWPRRLKACIQNHGSHFE 525
           ++++  +RA +D +P+R++ CI+  G  FE
Sbjct: 419 ELEIPYLRATVDAFPKRVRVCIEADGDIFE 448


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 224 TVARFFTTVCVHLIILFVVALFYGKNFFIRKKNFPIFFS 108
           T+  FF +   +LI++F+ A FY KN F   K   I+FS
Sbjct: 14  TIVEFFASTFTNLILIFLTA-FYVKNLFGTYKRMVIYFS 51


>U97193-7|AAK68163.1|  299|Caenorhabditis elegans Yeast sir related
           protein 2.4 protein.
          Length = 299

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 319 KGVKTNAVVYQNTVLTNLVEPVSHTNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLK 492
           KG+KT  + YQ T    +VE   H +++ +  SL  A   +++DL     D+ P  LK
Sbjct: 241 KGIKTTTINYQETAHEKIVETAIHADVKLILYSLCNALG-VNVDLGDDLPDEVPIPLK 297


>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 120 REILFSDEKIFTVEESYNKQN---DKVYAYSSEEASNRIPRVQRGHFPSSLMVWLGSFLL 290
           R I  ++ K F     YN       + + Y   E  NR+ R+ +  FP +L +  GS  +
Sbjct: 341 RLITVNNGKSFLASHGYNTGKFIQKQGFEYVFSECDNRMFRIGKREFPQNLRIDGGSDWV 400

Query: 291 GLNR 302
           G++R
Sbjct: 401 GIHR 404


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 120 REILFSDEKIFTVEESYNKQN---DKVYAYSSEEASNRIPRVQRGHFPSSLMVWLGSFLL 290
           R I  ++ K F     YN       + + Y   E  NR+ R+ +  FP +L +  GS  +
Sbjct: 341 RLITVNNGKSFLASHGYNTGKFIQKQGFEYVFSECDNRMFRIGKREFPQNLRIDGGSDWV 400

Query: 291 GLNR 302
           G++R
Sbjct: 401 GIHR 404


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 120 REILFSDEKIFTVEESYNKQN---DKVYAYSSEEASNRIPRVQRGHFPSSLMVWLGSFLL 290
           R I  ++ K F     YN       + + Y   E  NR+ R+ +  FP +L +  GS  +
Sbjct: 341 RLITVNNGKSFLASHGYNTGKFIQKQGFEYVFSECDNRMFRIGKREFPQNLRIDGGSDWV 400

Query: 291 GLNR 302
           G++R
Sbjct: 401 GIHR 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,421,628
Number of Sequences: 27780
Number of extensions: 348972
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)