Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1756
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.8  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.6  

>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 52  LEPLPEEPKAREAQVESRLVDGVADFLENYVV 147
           L+ LP E   RE  VE  L + VAD ++ YV+
Sbjct: 249 LDKLPWEDVRREMVVEKGLKEEVADKIKEYVL 280


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 1   VDGVTLDSK-----GSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPS 165
           VDG+ LDS       +P+      P+P    A   Q    L++ +  F++    ++ LP+
Sbjct: 283 VDGIQLDSNFTIESENPKIPTHTHPIPIFEIASSEQTCKNLLEKLIRFIDRASTKYSLPN 342

Query: 166 SAVE 177
            A +
Sbjct: 343 DAAQ 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,316
Number of Sequences: 5004
Number of extensions: 46592
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)